Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq88 96.9 9e-15 seq116 86.0 2e-11 >seq88 Length=2672896 Score = 96.9 bits (106), Expect = 9e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 111354 ATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA 111413 ||||| || || || |||||||||| | || |||| ||| |||| || | ||||| Sbjct 1502625 ATTGTTGAGGAGCTATTGTGGTTTATCAGAGGCTGTACTAATTCAAAGGAGTTAGCAGCG 1502684 Query 111414 AAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTG--GTC 111471 || ||| || |||||| | | ||| | || || ||||| ||| ||||| || Sbjct 1502685 AAGGGTGTCAACATTTGGAACGCCAATAGCTCTCGGTCTTTTCTTGAT--AGTTGTGGTT 1502742 Query 111472 TTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTG 111531 || |||| | |||||||| ||||| || ||||||||||||||||| ||| | || |||| Sbjct 1502743 TTATCGATAGAGAAGAAGGCGATCTGGGCCCAGTTTACGGATTTCAGTGGAGGCATTTTG 1502802 Query 111532 GTGC 111535 | || Sbjct 1502803 GAGC 1502806 >seq116 Length=4125705 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 363754 GGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTC 363813 ||| | || ||||| |||| |||||| ||||||| | | | |||||||| | || ||| Sbjct 2592823 GGAGAATCTAATGGTTTGGTACCCATGATTCGTGTATATAATAATACTGCTCGTTATGTC 2592764 Query 363814 GACCAGGGTGG--AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATG 363871 || || ||||| | |||| || || || ||||| |||||| | || || |||| Sbjct 2592763 GATCAAGGTGGTAATAAAAGACCA--GGTGCTTTTGCAATGTATTTGGAACCATGGCATG 2592706 Query 363872 CCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 ||||||| ||||| ||||| || ||| ||||| || || || Sbjct 2592705 CCGATATCTTTGAATTTCTAGAACTCAAAAAAAATACAGGTAA 2592663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303337969531952