Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq116 113 4e-20 >seq116 Length=4125705 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | || ||| | ||||| ||||| | Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| || ||||||||||| ||||| ||||| Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| | || | | ||||||||||||||||||| | | | | || ||| || || Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 2790507 ATTCAGAAGGAGTCCAC 2790523 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 132197 AGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTA 132256 ||||| | ||||| || ||| | || || || | ||||| ||| || | ||||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTG 2591444 Query 132257 GTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATG 132316 || |||| || | ||||||||||||||||| || || ||||| | |||||| ||||| Sbjct 2591445 GTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATT 2591504 Query 132317 TAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCC 132376 ||| || | || |||||||| | |||||| | || |||| ||| || | || Sbjct 2591505 GGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCC 2591564 Query 132377 CAGTTCCACAGATCATTCG 132395 |||||||| |||| | ||| Sbjct 2591565 CAGTTCCAAAGATTAGTCG 2591583 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | || || || | ||||| | || || ||||| Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | || || |||||| ||||||||||| || || || ||||| Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCA 2789989 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| || |||| | || ||||||||| | ||||||| | || | | | ||||| | Sbjct 2789990 ACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCG-CACATTATCTGATTACA 2790048 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||| || || |||| ||||| Sbjct 2790049 ACATTCAAAAAGAGTCAACGCTTCACTTAGT 2790079 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| || ||||| ||||| || | |||||| |||| |||||||| Sbjct 2789201 AACATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCT 2789260 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| || || | || || |||||| || || || || || || |||||| Sbjct 2789261 TCCGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGAT 2789320 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| |||| | || |||||||||||| || || | | | | |||||| Sbjct 2789321 CAGCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTAC 2789380 Query 24168 AACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 2789381 AACATCCAGAAGGAGTCGACCCTTCA 2789406 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | ||||| || | || ||| | ||||||||||| Sbjct 2789642 AATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTC 2789701 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| |||||| | || || ||||| ||||| ||||| || || || || || Sbjct 2789702 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 2789761 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||| || | | ||||||||| || || |||| | | | | ||| ||||| Sbjct 2789762 GCAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAA 2789821 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| ||||| || || || |||| Sbjct 2789822 CATCCAAAAGGAGTCGACCCTTCA 2789845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429931095505080