Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq116 134 1e-26 seq38 82.4 7e-11 >seq116 Length=4125705 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || | || | ||||||||||||||| ||||| || ||| Sbjct 2789869 CCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGAT 2789810 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||||||||||||||| || |||| | | ||||||||| || ||| Sbjct 2789809 AAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2789750 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| ||| ||| | | ||| | || |||| | ||||| Sbjct 2789749 ATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACT 2789690 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || || ||||||||||| Sbjct 2789689 TCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131014 CGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTG 131073 |||| |||||| || | || | |||||||||||| || |||||||||||| || || Sbjct 2789424 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 2789365 Query 131074 CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || |||||| || |||||||| ||| |||| || | |||||| || || || ||||| Sbjct 2789364 CGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCC 2789305 Query 131134 TCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACG 131193 || || || || ||| ||| | | || | ||| |||| | ||||| |||| | Sbjct 2789304 TCCTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGG 2789245 Query 131194 GTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| || || || | || || || |||||||||||| Sbjct 2789244 GTAATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATG 2789203 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||| || | || | |||||||||||| || |||||||| ||| | Sbjct 2789641 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2789582 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||||||||||||||| || |||| | | |||||| || || || Sbjct 2789581 AGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGA 2789522 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| || ||||| ||| | | || ||| | | ||| | ||||||| | ||||| Sbjct 2789521 ATTCCCTCCTTGTC-CTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGAC 2789463 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||| | ||| || ||||| || || || |||| Sbjct 2789462 TTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGA 2789425 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||||| |||||||| | || || ||||||||||| || ||||| Sbjct 2790326 GCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGA 2790267 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || |||| |||||||| ||| |||| || | ||||||||| || || Sbjct 2790266 CAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGG 2790207 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||||||||| ||||| ||| || |||| | | | ||| | ||||||| | |||| Sbjct 2790206 GATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACGTTCTCAATGGTATCGGATGCTTCGA 2790148 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || ||||| || || || |||||||| Sbjct 2790147 CCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || || |||||||||| ||| |||||||| || |||||||||||| Sbjct 2791010 GCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 2790951 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| || || || || ||| |||| | ||||| |||||||| || Sbjct 2790950 TAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGG 2790891 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||| || || ||||| ||| | | ||| | || || | | ||||| Sbjct 2790890 AATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGAC 2790831 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| || || || ||||| |||||||| Sbjct 2790830 TTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTC 131081 || ||||| || | || ||||| ||||||||||||||||| | | ||| |||| || Sbjct 2790082 AGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATG-TGCGACCATC 2790024 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 |||| ||||||||| ||| |||| || | || || || || || |||||||||||||| Sbjct 2790023 TTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTC 2789964 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || || ||| | | || | || |||| | ||| | || | |||| ||| Sbjct 2789963 CTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGT 2789904 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || |||||||| Sbjct 2789903 CTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || |||| ||||||||| |||| | || || || ||| | |||| ||| | ||| Sbjct 2591394 TTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTGTACGGT 2591453 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 |||| || ||||| || |||| || || || || | ||| || ||||| || | Sbjct 2591454 TCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGGGCGATA 2591513 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || |||||||| | ||||| || || | ||| || || | |||| | ||| Sbjct 2591514 AGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCCCAGTTCCAA 2591573 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAAT 145278 || ||||||| | ||| ||||||| |||||||||||||| Sbjct 2591574 AGATTAGTCGGCGTTACGCCCCACATATCGTACTGCAAAAT 2591614 >seq38 Length=2292016 Score = 82.4 bits (90), Expect = 7e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 46067 TTAATGCGTTTGAACGTATGCCGTGCGTGCGC-AAGAAAACCGACTGGGCGATGAAGTGG 46125 ||||||| ||||| | || || || ||| |||||| | ||||||| | || ||| Sbjct 219053 TTAATGCCATTGAAAACCTTCCATGTGT-CGCTAAGAAAGCAAACTGGGCACTAAATTGG 219111 Query 46126 ATCAA-CAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGG 46184 || || || | ||||||| || | |||||| | ||||||||||| ||| ||||| Sbjct 219112 ATTAATCATGAAT-CCGCGACATTTGGGGAGCGTGTTGTGGCCTTTGCTGCTGTAGAGGG 219170 Query 46185 CGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCC 46244 | || ||| |||||||||||| || || || | | |||| | || ||||||| Sbjct 219171 TATTTTCTTTAGTGGCAGTTTTGCAGCTATTTTCTGGTTGAAAAAAAGAGGACTCATGCC 219230 Query 46245 CGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGG 46285 ||||| || ||||| || || || || || | || |||| Sbjct 219231 TGGCCTTACCTTTAGTAATGAACTTATTTCTAGAGATGAGG 219271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007277450240