Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq69 291 5e-74 seq7 104 2e-17 seq116 89.7 3e-13 >seq69 Length=1184719 Score = 291 bits (322), Expect = 5e-74 Identities = 334/447 (75%), Gaps = 4/447 (1%) Strand=Plus/Minus Query 6157 CCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAA 6216 ||| |||||||| | | ||||| || || | || ||||||||||| || ||||| | Sbjct 764324 CCAAGATGGGGAGCGTCAACGTGAACCGGAGCGTCAGCGACGCGTTCTATCGGTACAAGA 764265 Query 6217 TGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCA 6276 ||||||| ||| || ||||||||||| ||||| ||||| ||||| || || || || | Sbjct 764264 TGCCGCGGATCCAGGCGAAGGTCGAGGGCAAGGGGAACGGGATTAAGACGGTGATCGTGA 764205 Query 6277 ACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCG 6336 ||||| || || || |||||| |||| | || || ||||||||||| || || |||| Sbjct 764204 ACATGGTCGACGTGGCCAAGGCGATCGGCAGACCGGCGACCTACCCGACCAAGTACTTCG 764145 Query 6337 GGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACG 6396 ||||||| || || || ||||| ||||| || ||| |||||||| |||||||| |||| Sbjct 764144 GGTGCGAGCTCGGGGCGCAGACCCAGTTCGACTTCAAGAACGAGCGGTTCATCGTGAACG 764085 Query 6397 GATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGC 6456 | ||||| || | ||||||| |||||| | || ||||| || || | |||| || | Sbjct 764084 GCTCGCACGACGCGACCAAGCTCCAGGACCTCCTCGACGGTTTCATCAGGAAGTACGTCC 764025 Query 6457 TGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCA 6516 | |||| | | ||||| ||||||||||||||||| || || | |||| || | Sbjct 764024 TCTGTCCGAACTGCGAGAACCCGGAGACCGAGCTGATGGTCAGCGCGAAGAAGGGGACTA 763965 Query 6517 TCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CACAAACT 6574 |||| ||||| ||||| || |||||| |||||||| ||| || | || ||||| || Sbjct 763964 TCTCGCAGGGGTGCAAGGCCTGCGGTCACCATGGCTTGCTCGA--GAGCAACCACAAGCT 763907 Query 6575 CAACACCTTCATACTGAAGAATCCTCC 6601 |||||| | ||| |||||||| || || Sbjct 763906 CAACACGTACATCCTGAAGAACCCGCC 763880 >seq7 Length=3067808 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||| ||| ||||||||||||| || |||||||| Sbjct 1403016 AAGCCCGTTCCCTTGGCAGTGGTTTTACTAAATAGTAGATAGGGACAGAGGAAATCTCGT 1403075 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || ||| ||||||||||||| || |||| Sbjct 1403076 TAATCCATTAATGGGCGTCACTAATTATATTACGA 1403110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/81 (84%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 25916 GGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGC 25970 ||| |||||||||||| ||||||||||||| || |||||||||||||| || ||| Sbjct 1403152 GGCAGTGGTTTCGCTATATAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTAATGG 1403211 Query 25971 GCGTCACTAATTAGATGACGA 25991 ||||||||||||| || |||| Sbjct 1403212 GCGTCACTAATTATATTACGA 1403232 >seq116 Length=4125705 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 38099 CAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACG 38158 || ||||| |||| ||||| || |||||| || || |||||||| |||||| ||| Sbjct 2789422 CAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACG 2789363 Query 38159 TTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTC 38218 | |||| || | ||| || ||||| || || | | || ||||||| || | || || Sbjct 2789362 TCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTC 2789303 Query 38219 TTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGT 38278 || || ||| || ||| ||||| | | ||| || | || || || | || Sbjct 2789302 CTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGT 2789243 Query 38279 AATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 ||| || || || ||||| || || || || ||||||||||||| Sbjct 2789242 AATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATGTTTT 2789199 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 || || ||||| || ||| |||||||| ||||||||||| || || | || ||| Sbjct 2790079 ACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCT 2790020 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || || ||||| || || | | ||||||||| | ||| | |||||||||||| | Sbjct 2790019 AACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGA 2789960 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | | || || || || || |||||||| || || Sbjct 2789959 ATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTG 2789900 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| || || || |||||||| Sbjct 2789899 CCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943379089816