Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq116 138 1e-27 >seq116 Length=4125705 Score = 138 bits (152), Expect = 1e-27 Identities = 228/322 (71%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| || ||||| || | ||||| || |||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 62652 TATCTATAATTTTATTGAGATT---TCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 ||||||| | || || ||||| | | |||| ||||| | || || |||||||| | Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAA--CCTTTG-CGACTTCTTTCAGTTTAA 2592080 Query 62709 GAAAATCAAA-----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGAT 62762 ||| ||||| | | | ||| ||||||||||||| || | || || | || Sbjct 2592081 CAAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAAT 2592140 Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62822 | || |||||||| |||| || | | ||| | | || || || || ||||| || | Sbjct 2592141 TGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGC 2592200 Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 62881 || || || |||| |||||||||||| | ||| | || || ||| ||||| || Sbjct 2592201 TTTTAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGC 2592259 Query 62882 ATGAATGGAGTACCAGTTTCAA 62903 ||| | ||||| |||||||||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAA 2592281 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 62177 AGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTG 62236 ||||| || || || | ||||| ||||| || | |||| || || || || |||||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTG 2591444 Query 62237 GTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 62296 || |||||||| | || || || ||||||||||| || || || ||||| || ||||| Sbjct 2591445 GTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATT 2591504 Query 62297 GGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 62356 || || | | ||| ||| | || ||||| | || ||||| ||||| |||| | || Sbjct 2591505 GGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCC 2591564 Query 62357 CAATTCCAAAGAT 62369 || |||||||||| Sbjct 2591565 CAGTTCCAAAGAT 2591577 Score = 111 bits (122), Expect = 2e-19 Identities = 180/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||||||| || | | || | ||| ||||| ||||| ||||| |||||||| Sbjct 2593054 CTGGACATTTGTTGCCTAGGTGTGCAGGCAAAAAATAGTGTAGGTGAAGCATGAGTAAAG 2593113 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | || || | | |||||| || || ||| | || |||||| || ||||||| Sbjct 2593114 TAGCGCTCCGATAAGAAATTGTATGTTTCTATAACCTTTTCAATATCCTCTTCATGAATT 2593173 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 | || || |||||||||| ||| ||||| ||||||||||||| ||| || || || Sbjct 2593174 GCCACAGCTACACGCATTAGCATATGCTGTGGTCTTTCAACGACTTTGCGATTAATCTTT 2593233 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | | ||| | | || | |||||||||||||| || || || ||| |||| || Sbjct 2593234 AGTAGGTAACTTCTCTCAAGGGTTTTAAAACCAAAGTAATTATAACTAAAATCTCTATCA 2593293 Query 63686 TAAATAATAACCGAGTTGA 63704 |||||||| | || |||| Sbjct 2593294 TAAATAATTGCAGAATTGA 2593312 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 |||| |||| | ||| || | | |||||||||| || | ||||||||| || | | Sbjct 2592423 GTGTGTACAGTTCTTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCGTGAG 2592482 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 ||||||| || ||||| | || || || |||||||||||||| ||||||||||||| Sbjct 2592483 GACACATTAAAGACCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGAATCC 2592542 Query 63099 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63145 | | || ||| | ||||| | | ||| ||||| || |||||| Sbjct 2592543 ACAAGGCATAAAACAATTCTCTTGCACGATGCTCCTCTTTGCCTGTA 2592589 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 63820 tttttttgtttctttgtgtagatttgATACGGCTATTCTAGCGGCTAGAATGGCATAATC 63879 ||| || |||||||| || | ||| || || || |||| || ||||| || ||||| || Sbjct 2593511 TTTCTTAGTTTCTTTATGCAAATTCGAAACAGCAATTCGGGCTGCTAGTATTGCATAGTC 2593570 Query 63880 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 63939 | |||| ||| || ||| || || |||| ||||| ||| | || | ||||||||| Sbjct 2593571 TGCGTGTTTTGTCGTCATAGTCGCAGCAGTTTCAGCTGCTAGATTATCAAGTTCTACCGT 2593630 Query 63940 TGTTACACCA 63949 |||||| ||| Sbjct 2593631 TGTTACTCCA 2593640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624586505600