Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq116 140 3e-28 seq23 82.4 7e-11 >seq116 Length=4125705 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || |||| ||| | || |||||| | || Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | ||| | || | ||| ||||||||||| ||||| || || | Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAG-GACAAAGAAGGAATTCCCCCAGATC 2789988 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || |||||||| || |||||||||| |||||| | ||||||| Sbjct 2789989 AACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACA 2790048 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | ||||||||||| || ||||| || ||||| || ||||| |||| |||| Sbjct 2790049 ACATTCAAAAAGAGTCAACGCTTCACTTAGTCCTCAGGCTTCGAGGTGGAA 2790099 Score = 132 bits (146), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| ||| ||||||| | ||||| ||| |||| Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| ||||| || || ||||| ||||| || |||||| Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || |||||| | || |||| ||||| | ||||||||| Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAAC 2790962 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || || || ||||| ||||||||||| || | || | ||||| ||||| Sbjct 2790963 ATCCAGAAGGAGTCCACCCTACATTTAGTACTTCGCCTTCGGGGAGGCAATTA 2791015 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || ||||| ||||||| | || || || | || Sbjct 2790098 AATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATC 2790157 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| | | |||| || | || ||||| ||||| || ||||| |||| Sbjct 2790158 CGATACCATTGAGAACGTTAAAGCTAAGATCCAG-GACAAGGAAGGAATCCCACCCGACC 2790216 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| | | || || || ||||| ||||||||||||| |||||| || ||||| | Sbjct 2790217 AGCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATA 2790276 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||| ||||| || || |||||||| || Sbjct 2790277 ATATTCAAAAGGAATCTACTCTGCATTTAGTCCT 2790310 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| | || || || ||||||| | ||||| ||| | || Sbjct 2789642 AATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTC 2789701 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| | ||| || ||| ||||| ||||| || ||||| ||||| Sbjct 2789702 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 2789761 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||||||||| || |||| |||| || ||| | ||| || || Sbjct 2789762 GCAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAA 2789821 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || || || || Sbjct 2789822 CATCCAAAAGGAGTCGACCCTTCA 2789845 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| | ||||| || ||||||| | ||||| ||| | || || || |||||| Sbjct 2789427 GTTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCGAG 2789486 Query 25071 TCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTAT 25129 ||||| |||| | ||| ||||| || || |||||||| || || ||| | | || Sbjct 2789487 AACGTGAAGGCAAAGATTCAG-GACAAGGAGGGAATTCCACCAGATCAGCAGAGACTCAT 2789545 Query 25130 TTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGA 25189 ||||||||||| || |||| |||| |||||| || ||| ||||| || || || || Sbjct 2789546 CTTTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGA 2789605 Query 25190 ATCCACGCTACA 25201 || || || || Sbjct 2789606 GTCGACCCTTCA 2789617 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || ||| | ||||| | ||||||||| |||| Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || | || | ||| || |||||||| ||||| || || Sbjct 2790387 GACACGATTGAAAACGTCA---AAACTAAGATTCAG-GATAAAGAAGGCATTCCTCCGGA 2790442 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || ||||| ||||| ||| | ||||||| || || | ||| || Sbjct 2790443 TCAGCAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTA 2790502 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| || || ||||| || ||| | || || Sbjct 2790503 CAATATTCAGAAGGAGTCCACTCTGCATCTCGTCCT 2790538 >seq23 Length=3064571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 25099 AAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATC 25158 |||| ||||||||||| || ||| || | |||||||| || || || | || |||| Sbjct 1521508 AAGGCATTCCACCTGATCAGCAGAGGTTAATTTTTGCTGGTAAGCAGCTTGAGGATGGAA 1521449 Query 25159 GCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAA 25218 | ||| || ||||||||||| ||||| || || ||| |||| || || | ||||| | Sbjct 1521448 GAACTTTGTCGGATTACAATATCCAAAAGGAGTCAACGTTACACTTGGTATTGAGGCTGA 1521389 Query 25219 GAGGAGGA 25226 |||| ||| Sbjct 1521388 GAGGTGGA 1521381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323056810840