Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq38 145 8e-30 seq62 109 6e-19 seq64 107 2e-18 >seq38 Length=2292016 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || |||| |||||||||||||||||||| ||||| ||||| || | |||| Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 ||||| || || |||| ||||||||| | || ||||| ||| ||| | ||||| ||| Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGA 218825 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| |||||||| || || ||||| || || | | ||| | | |||||| Sbjct 218824 TTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGGACATG-TGAAATAAATGT 218766 Query 93542 -TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGA 93589 || |||||||| || | ||| || | || ||| | ||||||| Sbjct 218765 ACGTTCGTCATCTTTTAGGCTGAGCCAGTCAGGTATATCCTGTGAAAGA 218717 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || | ||| |||||||| |||||||| || |||||||||||||| |||||||| ||| Sbjct 218602 TTGGATAAATCTACTTCTTCTACAGTCCAGAAGGATGCTTCTGCTTTCTTGTACATTTCC 218543 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || |||||| | |||||| ||||| || ||||| || || || ||| ||||||| Sbjct 218542 CAAATGTCTGGCCATTGAACCGGAAAGATCACAAATCGGCGTGGATTCTCTCTTAGTAAA 218483 Query 93701 GGCTCTAGTTG 93711 ||||| || || Sbjct 218482 GGCTCCAGCTG 218472 >seq62 Length=4720139 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| Sbjct 2259050 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTATGGGAGCGTGG 2258991 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 2258990 GTTCGAACCCCACACTTAGCAAAT 2258967 >seq64 Length=2089853 Score = 107 bits (118), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| | |||| ||||| Sbjct 1260054 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGTTCTGGTTCCCGCGAGGGATCGTGG 1259995 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| ||||||| | |||||| || || Sbjct 1259994 GTTCGAATCCCACACTTAGCAAATTCTTTTT 1259964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854284728640