Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq116 210 4e-49 seq20 165 2e-35 seq23 91.5 3e-13 >seq116 Length=4125705 Score = 210 bits (232), Expect = 4e-49 Identities = 187/234 (80%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||||| ||||| |||||||| | ||| || ||||| |||||||| || |||||||| || Sbjct 2791016 TTAATTGCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTA 2790957 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 |||||| | ||| | ||||| || | || ||||| ||||| ||||||| |||||||| Sbjct 2790956 ATCGGATAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTC 2790897 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || ||||| |||||||| |||||||| || |||| ||| |||||| ||||| | | Sbjct 2790896 CGGGGGAATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGC 2790837 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||| ||||||||||| || ||||||||||| ||||| |||||||| Sbjct 2790836 CTCGACTTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || |||| |||| ||| || || ||||| |||||||||||||| |||| Sbjct 2789871 TTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGG 2789812 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| |||| |||||| ||||| || |||||||| || ||||| |||| Sbjct 2789811 ATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTG 2789752 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| ||||| || |||||| ||||| | | || | Sbjct 2789751 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGA 2789692 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| ||||||||| || || ||||| ||||| || || ||||||||| Sbjct 2789691 CTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 188 bits (208), Expect = 1e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||| || |||| |||| ||| || || ||||| || |||||||| || |||| Sbjct 2789643 TTCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2789584 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||| |||| |||||| ||||| || |||||||| || || || |||| Sbjct 2789583 ACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTG 2789524 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || |||||||| |||||||||||||| ||| ||||||||| || | | || | Sbjct 2789523 GAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGA 2789464 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||||| ||||||||| || || || |||||||| |||| Sbjct 2789463 CTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGA 2789425 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| | | || ||||| ||||| ||||||||||| ||||| ||||| | Sbjct 2790099 TTCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAG 2790040 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | ||| | ||||||||||||||||| |||||||| || | |||||||| || || | Sbjct 2790039 ATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGG 2789980 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| ||||| |||||||| ||||| ||| || || ||||| | || || | Sbjct 2789979 GAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCA 2789920 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||| || ||||| || || || |||||||| || || ||||||||| Sbjct 2789919 CCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| |||| || || || || || || || ||||| || |||||||| || Sbjct 2790325 CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGAC 2790266 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||||| ||||| || ||||| || | ||| || ||||||||||| Sbjct 2790265 AGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGG 2790206 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| || || ||| ||| ||||| || | || ||| || Sbjct 2790205 ATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACC 2790146 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| |||||||| || || || || ||||| || || ||||||||| Sbjct 2790145 TCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || ||| | |||||||| || ||||| || || || Sbjct 2790781 CCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAA 2790722 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || || || || || ||||| || | || || ||||| || || Sbjct 2790721 AGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGG 2790662 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || ||||| || || || ||| ||||||||||| | || ||| || Sbjct 2790661 ATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACC 2790602 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || ||||| ||||| ||||| || |||||||| Sbjct 2790601 TCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || |||||||| || || || || || |||||| Sbjct 2790553 CCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAG 2790494 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || || || || | ||| || || || || ||| Sbjct 2790493 AGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGA 2790434 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || || |||||||| | |||||| || || ||||| | | || ||| Sbjct 2790433 ATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACT 2790374 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| ||||| || ||||| || || ||||| |||||||| Sbjct 2790373 TCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300 || || |||| |||| ||| || || ||||| || |||||||| |||||||| | || Sbjct 2789424 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 2789365 Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 | || || || | ||||| |||||||| || | || || || ||||||||||| || Sbjct 2789364 CGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCC 2789305 Query 68361 TCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAG 68420 ||||| ||||||||||| |||| || || || ||||| | | || || || | | Sbjct 2789304 TCCTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGG 2789245 Query 68421 GTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || || | |||||||| || |||||||| Sbjct 2789244 GTAATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 2789204 >seq20 Length=2461668 Score = 165 bits (182), Expect = 2e-35 Identities = 153/194 (79%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| ||||||||||| || || || ||||| |||||||| |||||||| || ||||| | Sbjct 1189127 CTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGA 1189068 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||| | || || || || |||||||| |||||||| || ||||| || |||||| || Sbjct 1189067 TGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCT 1189008 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 ||||||| || | | || || || | ||||||||| || || || |||||||| |||| Sbjct 1189007 CGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGA 1188948 Query 68452 ATATCTGCATTATG 68465 | |||||||| ||| Sbjct 1188947 AGATCTGCATGATG 1188934 >seq23 Length=3064571 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||||||||||| ||| ||||| |||||||| || ||||| || | || || ||||| Sbjct 1521396 CAATACCAAGTGTAACGTTGACTCCTTTTGGATATTGTAATCCGACAAAGTTCTTCCATC 1521455 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 || | |||||| || || || || | || || || || ||||||||||||| Sbjct 1521456 CTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTGATCAGGTGGAATGCCTT 1521508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611617017920