Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq4 102 2e-18 >seq4 Length=4731202 Score = 102 bits (112), Expect = 2e-18 Identities = 236/352 (67%), Gaps = 3/352 (1%) Strand=Plus/Minus Query 3152 TCATGCAGCTGCACGCGCAAAACTCTTACGCCTACAAATACTTTGGCTGCGAGCTGCTAA 3211 ||| | | |||||| | || |||| ||||||| | | ||| ||||||| | || | Sbjct 2754826 TCACGAACCTGCACACCCAGAACTTCTACGCCTTCCGGTTCTTCCTCTGCGAGATCCTCA 2754767 Query 3212 ACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTATAGGCGAAGACTTTT 3271 |||| |||||||| || | ||||| | ||||||| | ||| | | || || || Sbjct 2754766 ACTTCGTCAACGTGGTAGGCCAGATTTACTTCATGGACTTCTTCCTGGACGGCGAGTTCA 2754707 Query 3272 TGTTGTACGGAATCTATGTTACCTTCTTCAACCAGGAAGCCGCCCATCCGAACATGACGA 3331 | ||||| | || | ||||| | || | | |||| || | | ||| Sbjct 2754706 CGACCTACGGCTCAGAGGTGGTCAGCTTCACCGAG-ATGGAGCCCGAG-GAGCGCGTCGA 2754649 Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 ||||||| |||||||||| | | || || || || ||||| |||||| | | Sbjct 2754648 -CCCCATGTCCAGAGTCTTTCCTAAGGTGACCAAGTGCACCTTCCACAAGTACGGTGCCT 2754590 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 | || || | | || | ||| || |||||| | |||||| |||| | |||||||||| Sbjct 2754589 CCGGGACCGTTCAGAAGTTCGACGGGCTCTGCGTGCTCCCGCTGAACATCGTCAACGAGA 2754530 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCATCAGCGG 3503 |||||||| | ||||| ||||||||||| | |||| ||| || | ||||| Sbjct 2754529 AGATCTACGTCTTCCTTTGGTTCTGGTTTATCCTGCTGGCCGTCCTGAGCGG 2754478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479872236000