Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq116 141 2e-28 >seq116 Length=4125705 Score = 141 bits (156), Expect = 2e-28 Identities = 172/233 (74%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || |||| || || | ||| | || ||| ||||| |||||||| | Sbjct 2790329 CATG-CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAAT 2790271 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | |||||||| || ||||||||||| || || |||||||||| | ||| || Sbjct 2790270 CAGACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGG 2790211 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||||||| || |||||||| || ||||| ||||| || || | |||| | || Sbjct 2790210 GTGGGATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTT 2790151 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || | ||||| ||||| || || |||||||| || || ||||||||| Sbjct 2790150 CGACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || |||| ||| |||||||| | ||| || || || ||||| ||||||| | Sbjct 2790553 CCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAG 2790494 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||| || || || ||||| | | ||| ||| || Sbjct 2790493 AGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGA 2790434 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||||||||| || || | ||| |||||||| || | ||| || || ||| Sbjct 2790433 ATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACT 2790374 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || || || || ||||| |||||||| Sbjct 2790373 TCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | ||||| | | ||||| || || || ||||| | Sbjct 2790781 CCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAA 2790722 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 ||||| || || || || ||||||||||| |||||||| | | ||| || ||| Sbjct 2790721 AGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTG---GTCTGGC 2790665 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| |||||||| ||||| ||||| |||||||| || | || | ||| Sbjct 2790664 GGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCC 2790605 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || |||||||| || || || || ||||| || |||||||| Sbjct 2790604 ACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 113 bits (124), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || || || || | |||| ||| |||||||| || || || || | Sbjct 2790098 TCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGA 2790039 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || |||||||| || || || |||||||||| | |||||| ||||| Sbjct 2790038 TAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGA---TCTGG 2789982 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||||||||| ||||| || || || || |||||||| || | ||| | || Sbjct 2789981 GGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTC 2789922 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| || || || ||||| || || ||||||||| Sbjct 2789921 CACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 111 bits (122), Expect = 4e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || |||| || || |||||||| |||||||||| Sbjct 2789870 TCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGA 2789811 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || |||| || || || || ||||| || | ||| || ||| Sbjct 2789810 TAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGG 2789751 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || ||||| ||||| || || || || || | ||| | || || Sbjct 2789750 GATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGAC 2789691 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| ||||| || || |||||||| || || ||||||||| Sbjct 2789690 TTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179640252994608