Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq116 114 1e-20 seq65 111 2e-19 seq64 107 2e-18 seq3 105 7e-18 seq17 102 9e-17 seq70 95.1 1e-14 seq87 87.8 2e-12 >seq116 Length=4125705 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| || ||||||| || |||||||||||||| ||||||| ||| || || | Sbjct 2790313 CGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCA 2790254 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || |||| ||||| |||||||| || | || ||||||||||| ||| | | |||||| Sbjct 2790253 TCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTG 2790194 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || ||| | || | | || ||| | ||| || || | |||||| Sbjct 2790193 TCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATG 2790134 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || || ||||| |||||||| |||||| Sbjct 2790133 GTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| |||||| ||||||||||| || | || || || | || || || || Sbjct 2790530 ATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTG 2790471 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| ||||| || || | || |||||| || | || | || || || ||| ||| | | Sbjct 2790470 CTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCC-TGAATCT 2790412 Query 42125 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | ||||| | | | ||||||| || ||||| || | ||||| |||||||| | Sbjct 2790411 TAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAG 2790352 Query 42184 TTAGCGTCTTTACAAAGATTTGCAT 42208 | ||||| || || ||||| ||||| Sbjct 2790351 TGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || || || || | | ||| || | || ||||||||||| || || || Sbjct 2789834 CTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAA 2789775 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||| ||||||||| | ||| | | |||||||| ||| || || | | Sbjct 2789774 GATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATT 2789715 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||||| | || || || | |||||||| ||||| || || ||||| || Sbjct 2789714 CTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAAC 2789655 Query 42197 AAAGATTTGCATT 42209 ||| || |||||| Sbjct 2789654 AAAAATCTGCATT 2789642 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | |||||| || | || ||||||||||| || || || Sbjct 2789606 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAA 2789547 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||| |||||| || | ||| | | |||||||||| ||| | |||| || | Sbjct 2789546 GATGAGTCTCTGCTGATCTGGTGGAATTCCCTCCTTGTCC-TGAATCTTTGCCTTCACGT 2789488 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | || ||| | || || || | |||||||| ||||| || || ||||| | Sbjct 2789487 TCTCGATGGTATCGGAAGCCTCGACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAA 2789428 Query 42196 C 42196 | Sbjct 2789427 C 2789427 >seq65 Length=1316160 Score = 111 bits (122), Expect = 2e-19 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 56994 TATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||| |||||| | |||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 699320 TATAAAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 699261 Query 57054 ATACTCACCACTATACTACCGAGGATTGAAT 57084 ||||| ||||||||||||||||||| ||||| Sbjct 699260 ATACTGACCACTATACTACCGAGGAATGAAT 699230 >seq64 Length=2089853 Score = 107 bits (118), Expect = 2e-18 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1287184 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1287243 Query 57058 TCACCACTATACTACCGAGGATTGAAT 57084 | ||||||||||||||||||| ||||| Sbjct 1287244 TGACCACTATACTACCGAGGAATGAAT 1287270 >seq3 Length=3390926 Score = 105 bits (116), Expect = 7e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 3381564 AAAAATATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3381623 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 3381624 TGACCACTATACTACCGAGGA 3381644 >seq17 Length=2940332 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 314000 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 314059 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 314060 TGACCACTATACTACCGAGGA 314080 >seq70 Length=2372050 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2056236 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2056177 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 2056176 TACTACCGAGGA 2056165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 2059873 AAAAAAATCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2059814 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 2059813 TGACCACTATACTATCGAGGA 2059793 >seq87 Length=371117 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| | Sbjct 90062 AATTAACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGA 90121 Query 57061 CCACTATACTACCGAGGA 57078 ||||||||||| |||||| Sbjct 90122 CCACTATACTATCGAGGA 90139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206444410240