Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq116 118 1e-21 >seq116 Length=4125705 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| || ||||| ||||| || || | | || || | || Sbjct 2789854 AGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCC 2789795 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| | ||||||||| || || |||||||| || ||| Sbjct 2789794 TCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 2789735 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| ||| | || || || || ||||| | || | |||| Sbjct 2789734 TGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTC 2789675 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || | ||| || || ||||| |||||| Sbjct 2789674 TTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || || |||| ||||| || || || |||||||| || | Sbjct 2789641 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2789582 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | ||||| | |||||| || || ||| Sbjct 2789581 AGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGA 2789522 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || ||| ||| || ||| | ||||| || || ||| Sbjct 2789521 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACT 2789462 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 || | || | |||||||||||| | || || |||| Sbjct 2789461 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGA 2789425 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || |||| |||| ||| || |||||||||||||||||||| | | ||||| | Sbjct 2790085 CTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCA 2790026 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | |||||||||||| | || | || || || || || |||||||||||||| Sbjct 2790025 TCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTG 2789966 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || || || || ||| || || | ||| || || ||||| || | || | | Sbjct 2789965 TCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATG 2789906 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||||| || | || || || || || |||||| Sbjct 2789905 GTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| ||||| || || || ||||||||||| | | || || |||| Sbjct 2789415 AGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCC 2789356 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || | || |||||| ||||| |||||||| || || ||| Sbjct 2789355 TCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCT 2789296 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| || | || || || || || || | || | |||| Sbjct 2789295 TGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTC 2789236 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || ||||| || || || ||||| ||||| || Sbjct 2789235 TTCCCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| ||| | || || || || || ||||||||||| | | ||||| | || Sbjct 2790995 AAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATC 2790936 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || || || || || | ||||| ||||| ||||| || ||||||||||| || || Sbjct 2790935 CTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATC 2790876 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| ||||| |||||| ||| | || || || || ||||| | ||| | ||| Sbjct 2790875 TTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGT 2790816 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || ||||| || ||||| Sbjct 2790815 TTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 154029 TGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGAT 154088 ||||| || |||| | || || || ||| | || |||||| |||| || | ||| Sbjct 2591403 TGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTGTACGGTTCAATGGAT 2591462 Query 154089 TCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAG 154148 |||||||| || || || || ||||||| ||| || ||||| || | | |||||| Sbjct 2591463 TCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGGGCGATAAGCAAAGAA 2591522 Query 154149 TTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTA 154208 || || | |||||||||||| || ||| | | ||||||| ||||| | || || Sbjct 2591523 TTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCCCAGTTCCAAAGATTAGTC 2591582 Query 154209 GGTTGCACGTTCCACATGTCGTATTGCAAAA 154239 || ||| |||||| ||||| ||||||| Sbjct 2591583 GGCGTTACGCCCCACATATCGTACTGCAAAA 2591613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || ||||| |||||||| || ||||| | | ||||| | ||| Sbjct 2790310 AGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCATCT 2790251 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||||| || | || | | |||||||||||| || |||||||| || || Sbjct 2790250 TCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCC 2790191 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | ||||| || || || || | ||| | ||| Sbjct 2790190 TGGA-TCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATGGT 2790132 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | ||| || || || || |||||| Sbjct 2790131 CTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || || || ||||| ||||| | ||| |||| ||| || | || ||||||| || Sbjct 2592131 GAAGCTAAATTGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAG 2592190 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | ||| |||| | ||| ||||| || |||| ||||||||||| ||||| ||| Sbjct 2592191 AGATTGCTGCTTTTAATTGTGCCTAGATTTTGTTGATTCGATTTACGATTGCAGTGATCT 2592250 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 || |||| |||||||| || || ||||| ||||||| Sbjct 2592251 TTATACAGCATGTACGGAGTTCCAGTTTCAACTTGGG 2592287 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || | ||||| | | || ||||| ||||||||||| |||| Sbjct 2790782 ACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGA 2790723 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || | || || || || | || | || ||||||||| || || Sbjct 2790722 AAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGG 2790663 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || ||||| || || || | |||| ||||| || || | || || || |||| Sbjct 2790662 GATCCCTTCCTTATCCTG-AATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCA 2790604 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | |||| |||||||| || | ||||| || ||||| ||||| Sbjct 2790603 CCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638954155840