Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq116 104 2e-17 >seq116 Length=4125705 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | | ||||||||||| ||||| |||||| Sbjct 2789869 CCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGAT 2789810 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| || || || |||| | |||| || | ||| ||||| || || Sbjct 2789809 AAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2789750 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || |||| | || | ||||||| | ||| || Sbjct 2789749 ATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACT 2789690 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| || |||||||||||||| Sbjct 2789689 TCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| ||||| | ||||||| || |||||||||||||| | || || ||||| Sbjct 2790764 AACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTC 2790705 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | |||||| || | |||||| | ||| ||||| || || || ||||| || || | Sbjct 2790704 CAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCC-T 2790646 Query 138525 GATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| | ||||| | ||| | |||||| | | |||||||| | || | ||| | Sbjct 2790645 GAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCT 2790586 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || ||||| |||||||||||||| Sbjct 2790585 TGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||||| | | |||||||| || |||||||| ||| | || || |||||| Sbjct 2790991 ACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCCTCG 2790932 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | |||| || |||||||||||||| || || ||||| || || Sbjct 2790931 AGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGA 2790872 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 ||||| |||| | || | ||||| | || ||| || || | || | ||||| Sbjct 2790871 ATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTC 2790812 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || || || || || |||||||| Sbjct 2790811 CCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 138394 CGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTA 138453 |||| ||||| || | || | | | |||||||| || |||||||| ||| || |||| Sbjct 2789424 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 2789365 Query 138454 CGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCT 138513 || |||||| ||||| || |||| |||| | | ||| || || || || || || Sbjct 2789364 CGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCC 2789305 Query 138514 TCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACC 138573 || || || || || |||| | ||| | ||||||| | ||| ||||||| Sbjct 2789304 TCCTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGG 2789245 Query 138574 GTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || || ||||||| || || ||||||||||||||| Sbjct 2789244 GTAATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATG 2789203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256593729920