Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq116 127 2e-24 seq20 95.1 1e-14 >seq116 Length=4125705 Score = 127 bits (140), Expect = 2e-24 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||| | |||||||| | | | |||||||| ||||| ||||| || Sbjct 2790781 CCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAA 2790722 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || | |||||||||||| |||| || | |||||| || || || Sbjct 2790721 AGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGG 2790662 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCG-TACTCTCG 127063 || || ||||| ||| ||| ||| |||| | ||| ||||| |||||||| | || || Sbjct 2790661 ATCCCTTCCTTATCC-TGAATTTTGGCTTTAACGTT-TTCGATGGTGTCCGATGCT-TCC 2790605 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||| | ||| ||||| || || ||||| |||||||||||||| Sbjct 2790604 ACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 118 bits (130), Expect = 1e-21 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| || ||||| | ||||| || ||||||||||| ||||| | Sbjct 2790325 CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGAC 2790266 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| |||| || || |||||| ||||||||| |||||| ||||| || Sbjct 2790265 AGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGG 2790206 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCG-TACTCTCG 127063 || || ||||||||| ||| || |||| | ||| || | ||| || | | || ||| Sbjct 2790205 ATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACGTT-CTCAATGGTATCGGATGCT-TCG 2790149 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || ||||| || ||||| |||||||| Sbjct 2790148 ACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| |||| || | || ||||| || || || ||||| ||| Sbjct 2789642 TCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2789583 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| |||||||| || || || |||| | || ||||||||| || || Sbjct 2789582 CAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGG 2789523 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || |||||||||||| ||| | | || ||| | | |||| ||| || | | ||||| Sbjct 2789522 AATTCCCTCCTTGTCC-TGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGA 2789464 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| | ||| | || |||||||| || || || || Sbjct 2789463 CTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| |||| || | || ||||| ||||| || || || ||| Sbjct 2789870 TCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGA 2789811 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| |||||||| || || || |||| | || |||||| || || || Sbjct 2789810 TAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGG 2789751 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||| ||| ||| | | |||| ||||| | | |||||| Sbjct 2789750 GATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGAC 2789691 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || ||||| || ||||| || |||||||||||||| Sbjct 2789690 TTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||||||| || || || Sbjct 2789418 CGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCG 2789359 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || || ||| ||||||| | |||||||||||| || || |||||||| Sbjct 2789358 TCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTA 2789299 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || || ||| ||| | | ||| | ||||| | | |||||| |||| ||| | Sbjct 2789298 TCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATG 2789239 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || ||||||||||||||| Sbjct 2789238 GTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATG 2789203 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||| | || | ||| | || ||||| || ||||||||||| ||| Sbjct 2790553 CCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAG 2790494 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || ||||| |||| |||| ||||||||| ||||| Sbjct 2790493 AGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGA 2790434 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || || ||| || || |||| | ||| | ||||| | ||| ||| Sbjct 2790433 ATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACT 2790374 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | |||||||| || || ||||| || || ||||||||| || Sbjct 2790373 TCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCATGCCT 2790323 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || || || | ||| |||||||||||||| |||||||| | |||||| ||| ||| Sbjct 2790079 ACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCT 2790020 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| || || ||| ||||||| | || ||||| || || || || || |||||| Sbjct 2790019 AACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGA 2789960 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | ||| | ||||| | ||| || || | || | || ||| Sbjct 2789959 ATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTG 2789900 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| |||||||| Sbjct 2789899 CCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 >seq20 Length=2461668 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || | ||| ||||||||| |||| | ||||||||||| ||||| ||||||||||| Sbjct 1189093 ATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTT 1189034 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || |||| | |||| ||| || | ||| || |||| ||| | Sbjct 1189033 GTCCTGGATCTTAGCTTTGACGTTCTCGATGGTATCGGACGCCTCCACCTCGAGGGTGAT 1188974 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || || || ||||||||| Sbjct 1188973 GGTCTTGCCTGTTAGGGTCTTCACGAAGATCTGCATG 1188937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495236640640