Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq116 111 1e-19 >seq116 Length=4125705 Score = 111 bits (122), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | || |||| |||||| || ||||||||||| |||||||||| Sbjct 2790328 ATGCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAAT-- 2790271 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | ||| | | || ||| || ||||| || || ||| | ||||||| |||||||| | Sbjct 2790270 CAGACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGG 2790211 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || ||||| || || || | | || | || | || | || | ||| ||||| | Sbjct 2790210 GTGGGATTCCTTCCTTGTCCTGGA-TCTTAGCTTTAACGTTCTCAATGGTATCGGATGCT 2790152 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||| | || || || || ||||| || ||||| || ||||| Sbjct 2790151 TCGACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || || ||||| || ||||| || ||| || ||| ||| || Sbjct 2790535 ACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCG 2790476 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || || | || |||| ||||| ||||| ||||||||||||||||| ||| Sbjct 2790475 AGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGA 2790416 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| ||| | |||||||| | ||| ||||| | || | |||||| Sbjct 2790415 ATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTG 2790356 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| || || || ||||| Sbjct 2790355 CCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || | ||| ||| |||| || || || || || || || Sbjct 2790784 ATACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTC- 2790726 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || || ||| |||||||||||||| ||| | || || | |||||||| | Sbjct 2790725 -TGAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTG 2790667 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 |||| || ||||| ||||| |||||||| ||| | ||| | |||||| || | | Sbjct 2790666 GCGGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTT 2790607 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || | || | ||| ||||| || || ||||| |||||||| |||||| Sbjct 2790606 CCACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCATC 2790554 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | | |||| ||| || || || ||||| ||||| || |||||| Sbjct 2791009 CCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGAT 2790950 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | |||||| || ||| | || | ||| || |||||||| ||| Sbjct 2790949 AATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGA 2790890 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| |||||||||||||| || | || | || | ||||| || | |||||| Sbjct 2790889 ATTCCTTCCTTATCTTGAATTTTGACCTTTA-CGTTCTCGATCGTGTCCGACGCCTCGAC 2790831 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | ||||| ||||| || || || || || || ||||| Sbjct 2790830 TTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160 |||||||||||||| |||||| | || ||||| ||| | ||| ||||| | | | Sbjct 2591614 ATTTTGCAGTACGATATGTGGGGCGTAACGCCGACTAATCTTTGGAACTGGGCAGCTCTG 2591555 Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220 ||| || ||| | | |||||| | || || || || | | || ||||| ||| Sbjct 2591554 AAAGAAAAAATAGCAAAACACGGTGTTCGCAATTCTTTGCTTATCGCCCCAATGCCTACG 2591495 Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC---TAACAAT 124277 ||| | || || || ||||| ||||||||||||||| | || |||| ||| |||| || Sbjct 2591494 GCATCTACAGCACAGATTTTGGGAAACAACGAATCCATTGAACCGTACACCAGTAAC-AT 2591436 Query 124278 TTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGAC 124337 | ||| |||||||| | |||| || ||||| | |||| | |||| || || | Sbjct 2591435 CTATAC--CCGACGAGTCCTCTCCGGAGAGTTTCAGATCGTAAACCCTCATCTGTTGAAA 2591378 Query 124338 GAC 124340 ||| Sbjct 2591377 GAC 2591375 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || |||||| | || || ||| Sbjct 2789412 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 2789353 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | ||||| | ||||| || || ||||| || || ||||||||| Sbjct 2789352 AGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGA 2789293 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | ||| | |||||||||| |||||| ||||| |||| || || Sbjct 2789292 ATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTC 2789233 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || |||||||| ||||| Sbjct 2789232 CCAGTCAATGTCTTGACAAAAATCTGCAT 2789204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | || || || || || || || ||||||||||| ||||| ||| Sbjct 2789872 ATTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCG 2789813 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || || | || | || |||||||| || Sbjct 2789812 GATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGT 2789753 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || ||||| || || || | || | |||||||||| |||| Sbjct 2789752 GGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCG 2789693 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || ||||| || |||||||| ||||| Sbjct 2789692 ACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997911562560