Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05]
936 sequences; 201,220,334 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq116 111 1e-19
>seq116
Length=4125705
Score = 111 bits (122), Expect = 1e-19
Identities = 167/233 (72%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | || |||| |||||| || ||||||||||| ||||||||||
Sbjct 2790328 ATGCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAAT-- 2790271
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
| ||| | | || ||| || ||||| || || ||| | ||||||| |||||||| |
Sbjct 2790270 CAGACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGG 2790211
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287
| || || ||||| || || || | | || | || | || | || | ||| ||||| |
Sbjct 2790210 GTGGGATTCCTTCCTTGTCCTGGA-TCTTAGCTTTAACGTTCTCAATGGTATCGGATGCT 2790152
Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || | ||| | || || || || ||||| || ||||| || |||||
Sbjct 2790151 TCGACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| |||||||| || || ||||| || ||||| || ||| || ||| ||| ||
Sbjct 2790535 ACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCG 2790476
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| || || || | || |||| ||||| ||||| ||||||||||||||||| |||
Sbjct 2790475 AGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGA 2790416
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || ||||| ||| | |||||||| | ||| ||||| | || | ||||||
Sbjct 2790415 ATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTG 2790356
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || ||||| || || || |||||
Sbjct 2790355 CCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327
Score = 109 bits (120), Expect = 5e-19
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| || || | | || | ||| ||| |||| || || || || || || ||
Sbjct 2790784 ATACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTC- 2790726
Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
||| | || || ||| |||||||||||||| ||| | || || | |||||||| |
Sbjct 2790725 -TGAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTG 2790667
Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288
|||| || ||||| ||||| |||||||| ||| | ||| | |||||| || | |
Sbjct 2790666 GCGGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTT 2790607
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| || || | || | ||| ||||| || || ||||| |||||||| ||||||
Sbjct 2790606 CCACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCATC 2790554
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | | |||| ||| || || || ||||| ||||| || ||||||
Sbjct 2791009 CCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGAT 2790950
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || | |||||| || ||| | || | ||| || |||||||| |||
Sbjct 2790949 AATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGA 2790890
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| ||||| |||||||||||||| || | || | || | ||||| || | ||||||
Sbjct 2790889 ATTCCTTCCTTATCTTGAATTTTGACCTTTA-CGTTCTCGATCGTGTCCGACGCCTCGAC 2790831
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| ||||| | ||||| ||||| || || || || || || |||||
Sbjct 2790830 TTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783
Score = 93.3 bits (102), Expect = 4e-14
Identities = 168/243 (69%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 124101 ATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTA 124160
|||||||||||||| |||||| | || ||||| ||| | ||| ||||| | | |
Sbjct 2591614 ATTTTGCAGTACGATATGTGGGGCGTAACGCCGACTAATCTTTGGAACTGGGCAGCTCTG 2591555
Query 124161 AAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACG 124220
||| || ||| | | |||||| | || || || || | | || ||||| |||
Sbjct 2591554 AAAGAAAAAATAGCAAAACACGGTGTTCGCAATTCTTTGCTTATCGCCCCAATGCCTACG 2591495
Query 124221 GCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC---TAACAAT 124277
||| | || || || ||||| ||||||||||||||| | || |||| ||| |||| ||
Sbjct 2591494 GCATCTACAGCACAGATTTTGGGAAACAACGAATCCATTGAACCGTACACCAGTAAC-AT 2591436
Query 124278 TTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGAC 124337
| ||| |||||||| | |||| || ||||| | |||| | |||| || || |
Sbjct 2591435 CTATAC--CCGACGAGTCCTCTCCGGAGAGTTTCAGATCGTAAACCCTCATCTGTTGAAA 2591378
Query 124338 GAC 124340
|||
Sbjct 2591377 GAC 2591375
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| ||||| || |||||| | || || |||
Sbjct 2789412 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 2789353
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||| || || ||| | ||||| | ||||| || || ||||| || || |||||||||
Sbjct 2789352 AGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGA 2789293
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| || || | ||| | |||||||||| |||||| ||||| |||| || ||
Sbjct 2789292 ATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTC 2789233
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | || || |||||||| |||||
Sbjct 2789232 CCAGTCAATGTCTTGACAAAAATCTGCAT 2789204
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || || | || || || || || || || ||||||||||| ||||| |||
Sbjct 2789872 ATTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCG 2789813
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || ||| || | || || || || | || | || |||||||| ||
Sbjct 2789812 GATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGT 2789753
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || ||||| || ||||| || || || | || | |||||||||| ||||
Sbjct 2789752 GGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCG 2789693
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || | || ||||| || ||||| || |||||||| |||||
Sbjct 2789692 ACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451997911562560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |