Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq116 141 2e-28 seq20 114 3e-20 >seq116 Length=4125705 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || |||||||||||||||| ||| ||||| | ||||| Sbjct 2789863 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTA 2789804 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| |||||||| | ||||||||| || |||||| Sbjct 2789803 CGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCT 2789744 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || |||| ||||| | | || || |||| Sbjct 2789743 TCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGG 2789684 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || |||||||| || Sbjct 2789683 GTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTG 2789646 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || ||||||||||| |||| ||||||||| | || ||| Sbjct 2789635 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 2789576 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||| |||||||| | |||||| || || |||||| Sbjct 2789575 CGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCC 2789516 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||||||| |||| ||| || | | || || |||| Sbjct 2789515 TCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGG 2789456 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || || || || || || Sbjct 2789455 GTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| || ||||| | ||| || || ||||| ||||| | |||||| |||| || || Sbjct 2790092 TCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGT 2790033 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| | |||||| ||||||||||| | | || || || || |||||| Sbjct 2790032 GCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCC 2789973 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||||||||| ||| ||| ||| | ||||| | || || || ||||| Sbjct 2789972 TTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAA 2789913 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || ||||| || || Sbjct 2789912 TGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTG 2789874 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || ||||||||||| |||| |||||| || | |||||| Sbjct 2789424 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 2789365 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || ||||| ||||| ||||||||||| | | |||||| || || |||||| Sbjct 2789364 CGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCC 2789305 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || ||| | ||||| | | || || || | Sbjct 2789304 TCCTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGG 2789245 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || |||||||| || Sbjct 2789244 GTAATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTG 2789207 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||||| || || ||||| |||||||| || | |||||||| | | || Sbjct 2790547 CGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTA 2790488 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| || || ||||| | | |||||| |||||| ||| ||| Sbjct 2790487 CGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCT 2790428 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || ||| ||| | ||||| | | || || || || Sbjct 2790427 TCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAG 2790368 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| || || || || Sbjct 2790367 GTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTG 2790330 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || || || |||||||| |||| |||||| || | || || Sbjct 2791003 CGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTG 2790944 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || || || || ||||||||||| ||||| |||||||| ||||||| Sbjct 2790943 CGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCT 2790884 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| ||| |||| ||||| | | || || |||| Sbjct 2790883 TCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGA 2790824 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || ||||| || || || Sbjct 2790823 GTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTG 2790786 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| ||||| |||| || ||| | |||||| ||||||||||| ||||||| Sbjct 2789333 ATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAACATCCAGAAG 2789392 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| || |||||||| || Sbjct 2789393 GAGTCGACCCTTCACCTGGT 2789412 >seq20 Length=2461668 Score = 114 bits (126), Expect = 3e-20 Identities = 139/188 (74%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||| ||||||| | ||||| |||||||||| ||||||||| |||||| Sbjct 1189128 CCTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAG 1189069 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 |||||||||||||| |||||| ||| || || ||||| ||||| || ||| Sbjct 1189068 ATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTC 1189009 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||| || | | || || || | ||||| ||||| || || || || ||||| Sbjct 1189008 TCGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACG 1188949 Query 199619 AAAATTTG 199626 || || || Sbjct 1188948 AAGATCTG 1188941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178907461782712