Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq116 122 1e-22 >seq116 Length=4125705 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||||||||| || |||||||||| ||| || | Sbjct 2789858 ACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCC 2789799 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||||||||| || || | | ||||||||| | || | | ||||| Sbjct 2789798 ATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTT 2789739 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||||| ||| | || | | ||||||| | || || |||| ||||| Sbjct 2789738 GTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGAT 2789679 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| ||||| || || || |||||||| || |||||| Sbjct 2789678 GGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || |||||| || |||||||||||||| || || || | || ||| Sbjct 2790535 ACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCG 2790476 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||| || || || || | |||||| || | || | || || || ||| Sbjct 2790475 AGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGA 2790416 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| | |||| | | | ||||||| || ||||| || | ||||| |||||| Sbjct 2790415 ATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTG 2790356 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||||||||| ||||| ||||| Sbjct 2790355 CCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||| || | ||||| ||| |||||||| ||||| || || | Sbjct 2790327 TGCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAG 2790268 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || | |||||||| ||||| ||||| | ||||||||||| | Sbjct 2790267 ACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTG 2790208 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCC 46543 | | | ||||||||| |||||| ||| | || || | | || ||| | ||| Sbjct 2790207 GGATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACGTTCTCAATGGTATCGGATGCTTCG 2790149 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| |||||||| || || || || || ||||||||||| |||||| Sbjct 2790148 ACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||| ||||| ||||||||||| |||||||| | Sbjct 2789630 ACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCC 2789571 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||||||||| || || | | |||||| || | || | | |||||| Sbjct 2789570 ATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCCTCCTT 2789511 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||| | || | | || ||| | || || |||| ||||| Sbjct 2789510 GTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGGGTGAT 2789451 Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581 ||| ||||| || || || ||||| Sbjct 2789450 GGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||||| || | || |||||| ||||| ||||| ||||| | ||| || | Sbjct 2789419 ACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 2789360 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || || |||||||||||||| ||||| | |||||| |||| || | | |||||| Sbjct 2789359 GTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTT 2789300 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||| | | | | |||||| | || || || | || || Sbjct 2789299 ATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAAT 2789240 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||| || || |||| || || ||||| || ||||| || Sbjct 2789239 GGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||| || ||||| || |||| ||||| | || || | ||||||||||||||| Sbjct 2790062 CTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAA 2790003 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || || || | || | | || |||||| ||||| ||| | | Sbjct 2790002 GATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTT 2789943 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| | ||||| |||| || ||||| ||||| || || || ||||| Sbjct 2789942 TTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAAC 2789883 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 2789882 AAAGATCTGCATT 2789870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231786710720