Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05]
936 sequences; 201,220,334 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq116 122 1e-22
>seq116
Length=4125705
Score = 122 bits (134), Expect = 1e-22
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | || |||||||||||| || |||||||||| ||| || |
Sbjct 2789858 ACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCC 2789799
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||||||||| || || | | ||||||||| | || | | |||||
Sbjct 2789798 ATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTT 2789739
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||||| ||| | || | | ||||||| | || || |||| |||||
Sbjct 2789738 GTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGAT 2789679
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
||| ||||| || || || |||||||| || ||||||
Sbjct 2789678 GGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| || |||||| || |||||||||||||| || || || | || |||
Sbjct 2790535 ACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCG 2790476
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| |||||||| || || || || | |||||| || | || | || || || |||
Sbjct 2790475 AGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGA 2790416
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| | |||| | | | ||||||| || ||||| || | ||||| ||||||
Sbjct 2790415 ATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTG 2790356
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || ||||||||||| ||||| |||||
Sbjct 2790355 CCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327
Score = 113 bits (124), Expect = 5e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | |||| || | ||||| ||| |||||||| ||||| || || |
Sbjct 2790327 TGCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAG 2790268
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || ||||| | || || | |||||||| ||||| ||||| | ||||||||||| |
Sbjct 2790267 ACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTG 2790208
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCC 46543
| | | ||||||||| |||||| ||| | || || | | || ||| | |||
Sbjct 2790207 GGATTCCTTCCTTGTCCTGGATCTT-AGCTTTAACGTTCTCAATGGTATCGGATGCTTCG 2790149
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| |||| |||||||| || || || || || ||||||||||| ||||||
Sbjct 2790148 ACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | || |||||| ||||| ||||||||||| |||||||| |
Sbjct 2789630 ACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCC 2789571
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || |||||||||||||| || || | | |||||| || | || | | ||||||
Sbjct 2789570 ATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCCTCCTT 2789511
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| ||| | || | | || ||| | || || |||| |||||
Sbjct 2789510 GTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGGGTGAT 2789451
Query 46558 GGTTTTGCCCGTCAGCGTTTTAAC 46581
||| ||||| || || || |||||
Sbjct 2789450 GGTCTTGCCGGTAAGGGTCTTAAC 2789427
Score = 93.3 bits (102), Expect = 5e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| || | || |||||| ||||| ||||| ||||| | ||| || |
Sbjct 2789419 ACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCC 2789360
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || || |||||||||||||| ||||| | |||||| |||| || | | ||||||
Sbjct 2789359 GTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTT 2789300
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|| |||||| ||| | | | | |||||| | || || || | || ||
Sbjct 2789299 ATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAAT 2789240
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
||| || || |||| || || ||||| || ||||| ||
Sbjct 2789239 GGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201
Score = 87.8 bits (96), Expect = 2e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| ||||| || ||||| || |||| ||||| | || || | |||||||||||||||
Sbjct 2790062 CTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAA 2790003
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | || || || | || | | || |||||| ||||| ||| | |
Sbjct 2790002 GATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTT 2789943
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| | ||||| |||| || ||||| ||||| || || || |||||
Sbjct 2789942 TTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAAC 2789883
Query 46582 AAAGATTTGCATT 46594
|||||| ||||||
Sbjct 2789882 AAAGATCTGCATT 2789870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565231786710720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |