Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq116 87.8 1e-12 >seq116 Length=4125705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| || ||||||| ||| ||| ||||| ||||||||||| | Sbjct 2790326 GCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGA 2790267 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| || ||||| || || | || || || | |||||| || | || Sbjct 2790266 CAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGG 2790207 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || ||||| || | | || || | ||| || Sbjct 2790206 GATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGAC 2790147 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || || ||||| || | ||| || || ||||||||||| Sbjct 2790146 CTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || || | ||||| |||| || || || ||||| || |||| | || || Sbjct 2790541 CGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCA 2790482 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || || |||| ||||| | ||||||||||| || | ||||||||| Sbjct 2790481 TCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTA 2790422 Query 39625 TCGCATATTTTTTGTTTAATCG-TCGCTACTGTGTCTG-CGCTTTCCACGTCCAAAGTAA 39682 || | | | || |||| || | | | ||||| | ||| ||||| || || || | Sbjct 2790421 TC-CTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGC-CTCCACTTCTAAGGTGA 2790364 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||| || || | ||||| ||||||||||||||| Sbjct 2790363 TTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCATG 2790326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347365637381288