Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq116 120 3e-22 >seq116 Length=4125705 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| ||||||||| | || |||||||| |||| | | | Sbjct 2789425 TCGTTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCG 2789484 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || | ||| || | ||||| ||||||||||| | || || ||| | ||| Sbjct 2789485 AGAACG-TGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTC 2789543 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | ||||| || ||||||||||||||| ||| Sbjct 2789544 ATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 2789603 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||| || || |||| |||||| || | || || Sbjct 2789604 GAGTCGACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 2789641 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||||||||| | || |||||||| | Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||| | || || || ||||||||| | ||||| Sbjct 2790843 GACACGATCGAGAACG-TAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCA 2790901 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || ||||| || || || | ||||| | ||| ||||| Sbjct 2790902 ACAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAA 2790961 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||||| || || || Sbjct 2790962 CATCCAGAAGGAGTCCACCCTACATTTAGTACTTCG 2790997 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||| ||||| ||||||||| | || |||||||| | Sbjct 2789642 AATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTC 2789701 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | || | || |||| ||||| || ||||| || | ||||| Sbjct 2789702 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 2789761 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | || ||||| ||||| || || | || || | |||||| || Sbjct 2789762 GCAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAA 2789821 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| || || |||| |||||| || | || || Sbjct 2789822 CATCCAAAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCGTGGTGG 2789869 Score = 107 bits (118), Expect = 2e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || || || || || | || || || ||||| ||| |||| ||||||| Sbjct 2789199 AAAACATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGG 2789258 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||||| | ||| | || | || || | || || ||||||||||| ||| Sbjct 2789259 CTTCCGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCG 2789318 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||| || | || | ||| ||||| || ||||| |||| || || | ||| | Sbjct 2789319 ATCAGCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATT 2789378 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG 38462 |||||||||| ||||| |||| || || |||| |||||| || Sbjct 2789379 ACAACATCCAGAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTG 2789422 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||||||||| |||||||| |||||| | || || ||||| || Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || ||||| | ||| || || | || ||||| || ||||| | || || Sbjct 2790387 GACACGATTGAAAACG-TCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCA 2790445 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || ||||| || || || || | || |||||| ||||||||| Sbjct 2790446 GCAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAA 2790505 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || |||||| | || || || Sbjct 2790506 TATTCAGAAGGAGTCCACTCTGCATCTCGTCCTTCG 2790541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || |||||||| || || ||| | || || || || | Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | ||||| |||||| ||||| | || || || || || |||||| |||| Sbjct 2790615 GACACCATCGAAAACG-TTAAAGCCAAAATTCAGGATAAGGAAGGGAT-CCCGCCAGACC 2790672 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | ||| || ||||| |||| || | || || || ||||||| Sbjct 2790673 AGCAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACA 2790732 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || || || | | ||| |||||||| || || Sbjct 2790733 ACATTCAGAAAGAGTCAATGCTTCATTTGGTTCTTCG 2790769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166947978240