Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq113 134 5e-26 seq23 127 8e-24 seq116 107 8e-18 seq19 93.3 2e-13 seq42 86.0 2e-11 >seq113 Length=2554746 Score = 134 bits (148), Expect = 5e-26 Identities = 142/186 (76%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 ||||||||||| ||||| || |||| | | || | || | ||||||| | ||| Sbjct 1884877 AAAATGAAAGAGACAGCCGAGGCATATTTGAATACTTCGGTAAAGAATGCAGTCGTAACT 1884818 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || || ||||||||| | || | ||||||||||| ||||| ||||| |||||| Sbjct 1884817 GTACCTGCATACTTCAATGATTCTCAGAGACAAGCAACTAAGGATGCTGGACAGATTGCT 1884758 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTA 451453 ||| |||||||||||||| |||| || || || || |||||||| || ||||| || || Sbjct 1884757 GGTCTAAATGTTCTTCGAGTTATCAACGAGCCGACGGCAGCTGCGCTGGCATACGG-CTT 1884699 Query 451454 GGAAAA 451459 ||| || Sbjct 1884698 GGATAA 1884693 >seq23 Length=3064571 Score = 127 bits (140), Expect = 8e-24 Identities = 320/482 (66%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 451892 ATTGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTG 451951 ||| |||| || || || || |||||||| || |||||||| ||||| || | | ||| Sbjct 1525642 ATTCATGATATCGTACTGGTTGGAGGTTCCACTCGAATTCCCAAAATCCAGTCTCTCTTG 1525583 Query 451952 TCTTCTTATTTTGGAGGAAAACAACT--ATGTAAGAGCG-TAAATCCTGATGAAGCTGTT 452008 || || | ||||| ||||| || | || | |||||||| || |||||| Sbjct 1525582 CAAAATTTCTTCTGTGGAAAGCAACTGAATCTTT---CGATTAATCCTGACGAGGCTGTT 1525526 Query 452009 GCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAG-----ATGAT-GAAAAA 452062 || ||||| || || || ||||| ||||| || || || || | || | | Sbjct 1525525 GCTTATGGCGCCGCCGTCCAAGCTGCTATCCTTACCGGGGAAGGAAGCACGAGCGCTGCA 1525466 Query 452063 TTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGT 452122 || ||| |||| || || ||||| || || || ||| | || ||||||| |||||| Sbjct 1525465 TTGCAGGATGTTCTTTTGGTGGATGTCACTCCACTTTCTTTGGGCATTGAAACTGCTGGT 1525406 Query 452123 GGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACA 452182 || | ||||| || | ||| |||| || ||||||||||| ||| |||||| Sbjct 1525405 GGGGTTATGACCAACATCATTGAACGCAATGCTCGCATTCCTTGTAAGCAGACTCAAACG 1525346 Query 452183 TTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGT 452242 |||| ||| ||| || || || | ||| || |||||||| || || || ||||| Sbjct 1525345 TTTACAACATTTGCTGACAATCAGCCTGCTGTTACAATTCAAGTATTCGAGGGCGAACGA 1525286 Query 452243 GCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATG 452302 |||||||| ||| || || || ||| |||| | | ||| |||| Sbjct 1525285 GCAATGACCAAAGACAACAACTTGCTGGGAACATTTGAGTTAACTGGAATTGCTCCAGCA 1525226 Query 452303 CCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAAT 452362 ||||| || ||| | |||||| | || | |||| | ||||| ||||| ||||| || Sbjct 1525225 CCAAGAGGTGTTCCAAAGATTGAAGTCACATTTGATTTGGATGCCAATGGAATTCTGCAT 1525166 Query 452363 GT 452364 || Sbjct 1525165 GT 1525164 Score = 107 bits (118), Expect = 8e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 391150 AAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAA 391209 |||| ||||| |||||||| || | |||||||| | || || || ||||| ||||||| Sbjct 1521508 AAGGCATTCCACCTGATCAGCAGAGGTTAATTTTTGCTGGTAAGCAGCTTGAGGATGGAA 1521449 Query 391210 GAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGA 391269 |||||||| ||||||| ||||| | ||||| |||| | ||||| ||||| || |||| Sbjct 1521448 GAACTTTGTCGGATTACAATATCCAAAAGGAGTCAACGTTACACTTGGTATTGAGGCTGA 1521389 Query 391270 GAGG 391273 |||| Sbjct 1521388 GAGG 1521385 >seq116 Length=4125705 Score = 107 bits (118), Expect = 8e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||| ||||||| || || ||||| || || || || | || Sbjct 2789204 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTCC 2789263 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || || |||||||||||||| |||||||| || ||||| Sbjct 2789264 GACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAG 2789323 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || ||| | || || ||||| || || ||| | |||||| | ||||| || Sbjct 2789324 CAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAAC 2789383 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 2789384 ATCCAGAAGGAGTCGACCCTTCAC 2789407 Score = 104 bits (114), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || || || ||||| || || ||| | || || ||| |||| Sbjct 2790098 AATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATC 2790157 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| |||||| ||||| || || || || ||||||||||| || || || || Sbjct 2790158 CGATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || || ||| | || || ||| | |||||||| | || || | |||||||| Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | || || || ||||| Sbjct 2790278 TATTCAAAAGGAATCTACTCTGCATTTAGT 2790307 Score = 104 bits (114), Expect = 9e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || ||||| || || || | || Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | || |||||||||||||||||||||||||| || || ||| Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || ||| | ||||||||||| || |||||| | || || | ||||| || Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAAC 2790962 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTA 391259 || | ||||| | || || || |||||| Sbjct 2790963 ATCCAGAAGGAGTCCACCCTACATTTAGTA 2790992 Score = 100 bits (110), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || || || || || || ||||| | || || || |||| Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| |||| || ||||| || || ||||||||||| || ||||| Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCA 2789989 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | || || ||| | || || || | |||||||| | || || | ||||| || Sbjct 2789990 ACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAA 2790049 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || |||| ||||||||||| Sbjct 2790050 CATTCAAAAAGAGTCAACGCTTCACTTAGT 2790079 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| || ||||| ||||| || || | || || || | || Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | ||||| || | || || ||||| |||||||| | || | | || || ||| Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 2790507 ATTCAGAAGGA 2790517 Score = 89.7 bits (98), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || || || || || || || | || || ||| |||| Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| ||| ||||| |||||||| ||||||||||| || || || || || Sbjct 2790615 GACACCATCGAAAACGTTAAAGCCAAAATTCAGGATAAGGAAGGGATCCCGCCAGACCAG 2790674 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | ||||| ||| | || |||||| | || ||||| |||| | | || || || Sbjct 2790675 CAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACAAC 2790734 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | || || ||| ||||| || || Sbjct 2790735 ATTCAGAAAGAGTCAATGCTTCATTTGGT 2790763 >seq19 Length=2201758 Score = 93.3 bits (102), Expect = 2e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 43850 GTTGCTGTAGCTGTTAATGCTATAATAGGAATAGTCGGATA-ATGAGAACGTAAATTACT 43908 || ||||| |||||||| || |||||||||||| || | || | | ||| || Sbjct 202488 GTAGCTGTTGCTGTTAAGGCAATAATAGGAATATCAGGGCATATTATTTTGAAAACACCT 202429 Query 43909 AAGTTTCTTATATGTAGGACGAAAATCATGTCCCCATAAACTTAAACAATGAGCTTCATC 43968 || |||| | || | || |||||||| |||||||| ||||||||||||||||||||| Sbjct 202428 AA-TTTCCTGTAACTTGGTCGAAAATCGTGTCCCCACTCACTTAAACAATGAGCTTCATC 202370 Query 43969 TATTGCAAAATATGCAATATTTTTT 43993 ||| | || |||| ||| |||||| Sbjct 202369 TATGACCAAGTATGAAATCTTTTTT 202345 >seq42 Length=2850585 Score = 86.0 bits (94), Expect = 2e-11 Identities = 175/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 |||||||| | |||||||| | ||||| |||||||| || || || || || ||| Sbjct 2716285 GGAAAGCCAAAGATTCAAGTTCAGTATAAGGGTGAAACGAAGACGTTCTTCCCGGAGGAA 2716226 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 | || ||||| || || ||||| ||||| || ||| ||| | || | Sbjct 2716225 GTGAGTTCGATGGTCCTGGTAAAGATGAAGGAAACGGCGGAAGCATACCTAGGAAAGACC 2716166 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || |||| || | || || ||||||||||||||||| | || || || ||||| Sbjct 2716165 GTCACCAATGCCGTGGTCACCGTACCCGCTTATTTCAATGACTCGCAGCGTCAGGCAACC 2716106 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || | || || | ||| | || || ||||| || || || ||||| || || Sbjct 2716105 AAGGACTCCGGCACCATCTCGGGTCTTAACGTACTTCGGATAATCAACGAACCGACCGCC 2716046 Query 451433 GCTGCTCTAGCATATGGACT 451452 || || | || |||||||| Sbjct 2716045 GCAGCCATCGCCTATGGACT 2716026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975694706197088