Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq23 450 1e-120 seq88 107 1e-17 seq4 107 1e-17 seq71 102 6e-16 seq113 95.1 9e-14 >seq23 Length=3064571 Score = 450 bits (498), Expect = 1e-120 Identities = 1002/1482 (68%), Gaps = 45/1482 (3%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || |||| ||||| |||||||||||||||||||||||||||||||| | || || Sbjct 1525157 GGCTGTGACATGCAGAATTCCATTGGCATCCAAATCAAATGTGACTTCAATCTTTGGAAC 1525216 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 ||||| | || || | || || || | |||||||||||| || || ||||| Sbjct 1525217 ACCTCTTGGTGCTGGAGCAATTCCAGTTAACTCAAATGTTCCCAGCAAGTTGTTGTCTTT 1525276 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | | |||||| |||||||| | ||| || ||||| ||| ||||| || | | | Sbjct 1525277 GGTCATTGCTCGTTCGCCCTCGAATACTTGAATTGTAACAGCAGGCTGATTGTCAGCAAA 1525336 Query 517438 AGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 |||||||| | | || | | ||||||||||| | || | ||||| || ||| Sbjct 1525337 TGTTGTAAA--CGTTTGAGTCTGCTTACAAGGAATGCGAGCATTGCGTTCAATGATGTTG 1525394 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||||| ||||| || ||||| | || | |||||| ||||||||||| || | | | Sbjct 1525395 GTCATAACCCCACCAGCAGTTTCAATGCCCAAAGAAAGTGGAGTGACATCCACCAAAAGA 1525454 Query 517556 ATATTTTGAAGTTTTTCATCAGT------TTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 | || || | | | || || || ||| ||||| ||||| | || Sbjct 1525455 ACATCCTGCAATGCAGCGCTCGTGCTTCCTTCCCCGGTAAGGATAGCAGCTTGGACGGCG 1525514 Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 || ||||| |||||||| || |||||||||| | ||| |||| || ||| ||| Sbjct 1525515 GCGCCATAAGCAACAGCCTCGTCAGGATTAATCGAAAGATTCAGTTGCTTTCCACAGAAG 1525574 Query 517670 AAATTT-GAAAGA-AGT-TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 |||||| | |||| || || || || ||||| |||| || |||||||| | ||| Sbjct 1525575 AAATTTTGCAAGAGAGACTGGATT---TTGGGAATTCGAGTGGAACCTCCAACCAGTACG 1525631 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 || ||||| | | |||||||| || | ||| ||| | || ||||| |||||| Sbjct 1525632 ATATCATGAATGGATTTTTTATCCAACTTGGCATCGGTTAATGCCTTCTCAACTGGTTCA 1525691 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 ||| | | || | || | ||| | || || ||| | ||||| | | | | Sbjct 1525692 AGAGTAGAGCGGAAAAGATCGGCACATAACTCCTCAAATCTGGCTCTGGAGATTTTAGTA 1525751 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAA-CTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 | | |||| || || ||| |||||| || | || |||| | | | ||| ||||| Sbjct 1525752 TAAAAATCGATACCCTCGTACAAAGCGTCGATCTCCAATGAT-GCCTCAGTACTGGAAGA 1525810 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCT-GTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 517964 | | ||||| ||||||||| ||| || |||| ||| || | ||| || |||| Sbjct 1525811 CAACGTGCGTTTTGCACGTTCAGC-GCTAGTTCTTAATCTGCGAATCGCTCGTG--GATT 1525867 Query 517965 GATTCA-AATCTGTT-TTATATTTTCTCTTGAAAT---CTTCAACACACCATGTT--ACA 518017 | ||| || | || || ||||| || || |||| ||| || | ||| | || Sbjct 1525868 GGTTCTCAAGTTCTTCTTGTATTTCCT-TTCAAATTCTCTTGAAAA----ATGCTCTACC 1525922 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 | || || ||||| || || || ||||| | ||||| ||| | |||| | | |||| Sbjct 1525923 AATCGGTTGTCAAAGTCCTCTCCACCCAAATGAGTATCTCCAGCAGTAGATTTCACTTCA 1525982 Query 518078 AAAAGT---CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 |||||| || || || | || | || || |||||| || || ||||||| |||| Sbjct 1525983 AAAAGTGAACCTTCGTCTATCGATAGAATAGAAACATCAAAAGTGCCTCCACCCAAATCA 1526042 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 ||||| | || || ||||| | ||||||||||| ||||| |||| ||||||| Sbjct 1526043 AAAATCAAGACGTTTCTTTCTCCTTTCAAATTTTTATCAAGTCCATAGGCAAGAGCAGCA 1526102 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || ||||| || |||||||| || | || |||||||||||||| | || ||||| ||| Sbjct 1526103 GCGGTTGGCTCGTTAATAATCCTAAGGACGTTAAGACCAGCAATAGTACCAGCATCCTTA 1526162 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 || ||||||| || ||||| ||||| || || ||||| ||||| || || || || ||| Sbjct 1526163 GTAGCTTGTCGCTGGGAATCATTAAAGTAAGCCGGAACTGTAATCACAGCTTCGGTGACT 1526222 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGA--TGAAA 518372 | || || | || || || | | | |||| || | || ||| || ||| Sbjct 1526223 TTCTTCCCCAGGTAGGCTTCAGCGATCTCTCTCATCTTTGACAGAACCATGGAACTGA-- 1526280 Query 518373 TTTGTTCTGGGGAAT--ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430 | | || |||| | ||| |||| |||| | | | ||| || | | |||||| Sbjct 1526281 --TCTCCTCGGGATTGAATTTCTTGATTTCACCTCGGAACTCTACCTCTATCTTTGGTTT 1526338 Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTC 518490 ||| | || | || ||||| ||||||| || ||||| ||||| ||||||| Sbjct 1526339 CCCTCCATCGTTCACTACCTTAAAAGGCCAGTGCTTTATATCGTCTTGAATCTTTTGGTC 1526398 Query 518491 ATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGC 518550 || || ||| || || || ||||| ||||| || | |||||| | || || || || Sbjct 1526399 ATCGTAACGTCTTCCGATCAAACGTTTAGCATCGAAGACAGTATTTGCAGGGTTCATAGC 1526458 Query 518551 AGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGA 518610 | |||| | ||| || |||||||| || || |||| || || ||||||| ||||| Sbjct 1526459 AACTTGGTTTTTCGCAGCATCTCCGATGAGGCGTTCGGTGTCGGTAAATGCCACATAACT 1526518 Query 518611 TGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATAC 518670 || || || | ||| |||||||| || ||||| ||||| || ||||| | ||||| || Sbjct 1526519 CGGGGTGGTTCTATTCCCTTGATCGTTAGCAATTATTTCCACCTTACCTTGCTGCCAAAC 1526578 Query 518671 ACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || ||| | | || ||||| ||||| || || | ||| Sbjct 1526579 TCCAACGCAAGAATACGTCGTTCCCAAATCTATTCCCACAGC 1526620 >seq88 Length=2672896 Score = 107 bits (118), Expect = 1e-17 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 870817 TCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATC 870876 |||||||||||| || || ||||| |||| || ||||| || |||||||| || || Sbjct 1649890 TCCAAATATTGCCAAGGAGATGCACGTTGGGCACTTAAGGTCCACTATTATCGGGGATAG 1649949 Query 870877 TATTTGTAGGGTATTAGAA-ATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTG 870935 |||||||||| | |||||| || || || || |||||| | | |||||||| || | Sbjct 1649950 TATTTGTAGGTTGTTAGAATATTTG-GGCCATGATGTTATGAGGCTGAATCATGTAGGCG 1650008 Query 870936 ATTGGGGAACTCAATTCGGTATGTTAATTGC 870966 ||||||| |||||||| || ||| | ||||| Sbjct 1650009 ATTGGGGCACTCAATTTGGAATGCTCATTGC 1650039 >seq4 Length=4731202 Score = 107 bits (118), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||||||||| ||||| | | ||| | ||| || || |||| ||| | |||| Sbjct 3486988 TCAAAATCTTCTCCTCCAAGGTGAGTGTCTCCATTTGTGGCAACAACTTCGAATACTCCA 3486929 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 | || | || | | | | || ||| || ||||| |||| |||||| | || || Sbjct 3486928 TTGTCGATAGTGAGCAAACTGACGTCAAAAGTACCACCTCCCAAATCAAAGACGAGGACG 3486869 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 ||| ||||| |||| | ||||| |||||||| |||| ||| || |||||||||||| Sbjct 3486868 TTCTTTTCTCCATCTT---TCTTATCCAGACCATAGGCAATAGCTGCTGCAGTTGGTTCA 3486812 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || ||||||| || || || |||| ||| | || |||||||| || || Sbjct 3486811 TTGATGATTCTCATGACGTTCAGTCCAGAGATTGTACCAGCATCTTTGGTTGC 3486759 >seq71 Length=681105 Score = 102 bits (112), Expect = 6e-16 Identities = 258/389 (66%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || || | || || ||||||||||| | ||||| ||||| || || | || | Sbjct 356924 GGCCGTTACGTGGAGTATCCCATTGGCATCGATGTCAAAGGTGACGTCGATCTTGGGAAT 356865 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 || | | ||||| | || || || | ||| ||||||| || ||||| || Sbjct 356864 GCCACGTGGTGCAGGAGCAATTCCACTCAGTTCGAATCTTCCCAGCAAGTTGTTATCCTT 356805 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | || || |||||| | | || || |||||| ||| ||| ||||| || || Sbjct 356804 GGTCATCGCTCTCTCTCCCTCGTACACCTGAATGGTAACTCCAGGTTGGTTATCGGAGTA 356745 Query 517438 AGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 ||| || || |||| || | ||| || || || || || | || || || |||| Sbjct 356744 AGTGGTGAA-CGTCTGCGACTGTTTGCACGGGATACGTGCATTGCGTTCGATGATGTTGG 356686 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 517556 |||||| ||||| || ||||| | ||||| || ||||||| || || || || | || Sbjct 356685 TCATAACGCCACCAGCAGTTTCGATGCCAAGGGAGAGAGGAGCAACGTCCACCAGCAGAA 356626 Query 517557 TATTTTGA-------AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 517609 || ||| || | || || || | || | |||||| || || |||| ||| Sbjct 356625 CATCCTGAAGAGCGGAGCTCTTGTTCCCTTCGCCCGA-AAGAATCGCAGCCTGAACAGCT 356567 Query 517610 GCACCATATGCAACAGCTTCATCAGGATT 517638 || || || ||||| ||||| ||||| || Sbjct 356566 GCTCCGTACGCAACCGCTTCGTCAGGGTT 356538 >seq113 Length=2554746 Score = 95.1 bits (104), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 518167 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 518226 |||||| | || || || | ||||| || || || || || |||| || | |||||| Sbjct 1884692 TTTATCCAAGCCGTATGCCAGCGCAGCTGCCGTCGGCTCGTTGATAACTCGAAGAACATT 1884751 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||||||||||| ||| ||||| ||||| |||||||| || ||||| || || ||||| Sbjct 1884752 TAGACCAGCAATCTGTCCAGCATCCTTAGTTGCTTGTCTCTGAGAATCATTGAAGTATGC 1884811 Query 518287 AGGAACAGTAATAACGGCAT 518306 ||| ||||| | || |||| Sbjct 1884812 AGGTACAGTTACGACTGCAT 1884831 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 || |||||||| || || ||||| || || || || || | | |||||||| || ||| Sbjct 1884699 AAGCCGTATGCCAGCGCAGCTGCCGTCGGCTCGTTGATAACTCGAAGAACATTTAGACCA 1884758 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 ||||| | ||| ||| ||||||||||||||| | ||||| || ||||| |||||| Sbjct 1884759 GCAATCTGTCCAGCATCCTTAGTTGCTTGTCTCTGAGAATCATTGAAGTATGCAGGTACA 1884818 Query 322361 GTAATAACTGCTTTATT 322377 || | ||||| || || Sbjct 1884819 GTTACGACTGCATTCTT 1884835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780775952596816