Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20 111 1e-19 seq116 105 4e-18 >seq20 Length=2461668 Score = 111 bits (122), Expect = 1e-19 Identities = 148/203 (73%), Gaps = 12/203 (6%) Strand=Plus/Minus Query 34786 TGCTTT--CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCC 34843 |||||| ||||||| ||||||||||| ||||| | | |||| |||| ||| ||||| Sbjct 1189135 TGCTTTACCTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCC 1189076 Query 34844 GGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTT 34903 || || || || || ||||| || | || | ||||||||||| ||||| ||| Sbjct 1189075 AGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTT 1189016 Query 34904 GACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 |||| |||| ||||| || ||||| || |||| ||| ||||| || || || Sbjct 1189015 GACGTTCTCGATGGTATCG---GAC--GCCTCCACCTCGAGGGTGATGGTCTTGCCTGTT 1188961 Query 34959 AGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||||||||| Sbjct 1188960 AGGGTCTTCACGAAGATCTGCAT 1188938 >seq116 Length=4125705 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||| ||||| |||| |||| |||| |||||||| || || Sbjct 2790745 TCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAG 2790686 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| | ||||||||| |||| | ||| ||||| || ||| || ||| ||| | Sbjct 2790685 ATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTT 2790626 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || || || || | |||||| || || ||||| || || || ||| Sbjct 2790625 TCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACA 2790566 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 2790565 AAAATCTGCAT 2790555 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || || || ||||||||||| || | | || |||| || Sbjct 2789851 ACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCCTCT 2789792 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || |||| ||||||||| | || | || |||||||| Sbjct 2789791 AGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGG 2789732 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || |||| || ||||| || || | ||| ||||| | Sbjct 2789731 ATCTTCGCCTTTAC--ATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTCT 2789674 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||||||||| ||||| |||||||| Sbjct 2789673 TGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || ||||| || ||| | || |||| || || || || || ||||| Sbjct 2790517 TCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAG 2790458 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| || ||||| || | || | || || || || |||||| ||||||| | Sbjct 2790457 ATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTT 2790398 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || ||||| || || | ||| || ||||| || ||||| || || || Sbjct 2790397 TCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACG 2790338 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 2790337 AAGATCTGCAT 2790327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629896742208