Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq116 156 5e-33 seq38 105 8e-18 >seq116 Length=4125705 Score = 156 bits (172), Expect = 5e-33 Identities = 217/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| |||| ||||| ||||| || | ||||| |||||||||||||| ||||| |||| Sbjct 2592670 TATTTTTTTTGAGTTCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCAAATACATTG 2592729 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | ||||||||| ||||||||| |||||||| | ||| | |||||||| ||||| | Sbjct 2592730 CAAAAGCACCTGGTCTTTTATTACCACCTTGATCGACATAACGAGCAGTATTATTATATA 2592789 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 | | | ||| || || | |||||| ||| ||||| || || || || | |||| Sbjct 2592790 CACGAATCATGGGTACCAAACCATTAGATTCTCCATTAGTGCCTGATATTCTAGTTCCTT 2592849 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 | ||||| ||| | |||| | || || || || || |||| || ||||||| Sbjct 2592850 TCGCTCTAATACAATTAATACTTAGTCCGATTCCTCCGGCTGATTTACTGATAAGAGCAC 2592909 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 | | ||| | ||||||||||| || || || ||||| || |||| | | || |||| Sbjct 2592910 ATCTTTTCAATGTATCATAAATGCCCTCGATGCTATCTTCGCTCATTGTCAGCAGGAAAC 2592969 Query 48577 AACT 48580 | || Sbjct 2592970 AGCT 2592973 Score = 122 bits (134), Expect = 1e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 ||||| ||| || || |||||| |||| | ||| ||||| || || |||||||| || Sbjct 2593086 AAATAGTGTAGGTGAAGCATGAGTAAAGTAGCGCTCCGATAAGAAATTGTATGTTTCTAT 2593145 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 ||| || |||||| || ||| || | | || ||||||||||| ||||| || || Sbjct 2593146 AACCTTTTCAATATCCTCTTCATGAATTGCCACAGCTACACGCATTAGCATATGCTGTGG 2593205 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 ||||||||| | |||| ||| || || | || || | | || | ||||||||||| Sbjct 2593206 TCTTTCAACGACTTTGCGATTAATCTTTAGTAGGTAACTTCTCTCAAGGGTTTTAAAACC 2593265 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 ||| || || || ||| || |||||| |||||||| ||||| Sbjct 2593266 AAAGTAATTATAACTAAAATCTCTATCATAAATAATTGCAGAATT 2593310 >seq38 Length=2292016 Score = 105 bits (116), Expect = 8e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 |||||||| | || || || || || ||||||| |||||| | ||| | | || Sbjct 219562 CCTAATTCGACCAGAAGCCTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAG 219503 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || || | || ||| ||||| |||||||| | ||||||||||||||| | || Sbjct 219502 TTCATACCAATCATTTCAACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACG 219443 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || | |||||| ||| ||| | |||| || | || || |||||||||| Sbjct 219442 GCATTCTTTATAATGGATGTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAAC 219383 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCT 18985 |||||||| ||||| |||||||| | |||| Sbjct 219382 ATCAAACACGCAAAGTCACAATGCAAACCCT 219352 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||| || |||||||| ||||| | || ||||||||||| ||||||||||| Sbjct 219781 CATCACTCCCCACTTCTGATATTCACCAACTTTCTTCTCAAAGAAATTTGTTTTTCCCTC 219722 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATT 18749 | || ||| ||||||||||||||||||||| Sbjct 219721 AAGGGAAATATGTTCCATAAAATCAAATGGATT 219689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102223327040