Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq258 223 3e-52 seq23 196 4e-44 seq113 125 6e-23 seq116 95.1 1e-13 >seq258 Length=87302 Score = 223 bits (246), Expect = 3e-52 Identities = 369/522 (71%), Gaps = 18/522 (3%) Strand=Plus/Plus Query 368550 AAAACATTTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTT 368609 ||||| |||| ||||||||| || || | || ||| | | || |||| | | | Sbjct 8367 AAAACGATTTGGTAATTGGCTGAAAGATGCTAGGGACTGGGCTGTCTCTAGAAATCGTTA 8426 Query 368610 TTGGGGAACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGG 368669 |||||| | ||| || ||| | |||| |||||| ||| | |||||||||| ||||| || Sbjct 8427 TTGGGGTAATCCTATACCACTGTGGATATCTGAAGATAGAAAAGAAATTGTATGTATTGG 8486 Query 368670 TTCAATTAAAGAATTGCAAGAATTATCTGGTGTGCAAAATATTAGTGATTTACATATTGA 368729 || |||||| || |||| ||||||||| |||||| | ||| | ||| || Sbjct 8487 AAGCATCAAAGAACTGGAAGAGTTATCTGGTACT-AAAATA--ACTGACATTCATCGGGA 8543 Query 368730 TAAAATTGATCACATTAAA-ATTCCATCAAA--GAA-AGGAAAAGGTTTATTGTCTCGAG 368785 | |||||| || || | ||||||||||| || |||| || || | ||||| Sbjct 8544 AAGCATTGAT-ACTTTGACTATTCCATCAAATCGACCAGGACAACCACCTTTATATCGAG 8602 Query 368786 TTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATT 368845 || || ||||| ||||| ||||||||||| || ||||||||||| | |||| |||||| Sbjct 8603 TTTCAGAGGTTTTCGATTGTTGGTTTGAATCGGGATCTATGCCTTACGCTCAATTACATT 8662 Query 368846 ATCCATTTGATAACGCAAAATACTTTGATAATGATAAAGATTATGTGGCTGATTTTGTAA 368905 |||||||||| || || |||||||| | ||| || || ||||||| | Sbjct 8663 ATCCATTTGAGCACATCAAGAACTTTGATGA-----AAGCTTTCCTG-CTGATTTCATTG 8716 Query 368906 CAGAATCAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTA 368965 ||||| ||| || || || ||||||||||| || || || |||| |||| ||||| Sbjct 8717 CAGAAGGAATAGACCAGACTCGTGGTTGGTTCTACACTCTGCTAGTCATATCAACAGCAC 8776 Query 368966 TTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAACTGG--TATTGTTAATGCATCTGA 369023 |||| | ||||| || ||||||||| || | | | ||| || | ||| ||||| || Sbjct 8777 TTTTTGGAAAACCTGCCTTTAAAAATTTAGTTGCTAATGGCTTAGTATTA--GCATCAGA 8834 Query 369024 TGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCGATCC 369065 ||| ||||| ||||||||| | || |||||| | ||||| Sbjct 8835 TGGACAAAAAATGTCAAAACGGAAAAAGAATTATCCAGATCC 8876 >seq23 Length=3064571 Score = 196 bits (216), Expect = 4e-44 Identities = 375/550 (68%), Gaps = 2/550 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| | || |||||||| ||||| || ||| ||| ||||| |||||||| | ||||| Sbjct 1526620 GCTGTGGGAATAGATTTGGGAACGACGTATTCTTGCGTTGGAGTTTGGCAGCAAGGTAAG 1526561 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| ||||| || |||||||| || ||||| || || |||||| | || || Sbjct 1526560 GTGGAAATAATTGCTAACGATCAAGGGAATAGAACCACCCCGAGTTATGTGGCATTTACC 1526501 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | | || ||||| || ||| | |||| || || ||| | ||| Sbjct 1526500 GACACCGAACGCCTCATCGGAGATGCTGCGAAAAACCAAGTTGCTATGAACCCTGCAAAT 1526441 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | || |||||||||||||| || |||||| ||| |||| | |||| | Sbjct 1526440 ACTGTCTTCGATGCTAAACGTTTGATCGGAAGACGTTACGATGACCAAAAGATTCAAGAC 1526381 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||| ||||| |||||||| | | || || | | || ||||| | || | || | Sbjct 1526380 GATATAAAGCACTGGCCTTTTAAGGTAGTGAACGATGGAGGGAAACCAAAGATAG-AGGT 1526322 Query 550292 ACTCAT-GAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | ||| | || |||| || || | || || |||||| | Sbjct 1526321 AGAGTTCCGAGGTGAAATCAAGAAATTCAATCCCGAGGAGATCAGTTCCATGGTTCTGTC 1526262 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | | || || | | || | |||| || || || || || || Sbjct 1526261 AAAGATGAGAGAGATCGCTGAAGCCTACCTGGGGAAGAAAGTCACCGAAGCTGTGATTAC 1526202 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || || || || |||||||| || || || ||||||||||| |||||||| |||||| Sbjct 1526201 AGTTCCGGCTTACTTTAATGATTCCCAGCGACAAGCTACTAAGGATGCTGGTACTATTGC 1526142 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| ||||| || ||| | ||||| || || || || |||||||| ||||| |||||||| Sbjct 1526141 TGGTCTTAACGTCCTTAGGATTATTAACGAGCCAACCGCTGCTGCTCTTGCCTATGGACT 1526082 Query 550531 TGATAAACAT 550540 ||||||| || Sbjct 1526081 TGATAAAAAT 1526072 Score = 150 bits (166), Expect = 1e-30 Identities = 405/618 (66%), Gaps = 20/618 (3%) Strand=Plus/Minus Query 551985 GAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGAT 552044 ||||| || |||| | |||| || || || |||| |||||| || | ||| | ||| Sbjct 1525768 GAGGGTATCGATTTTTATACTAAAATCTCCAGAGCCAGATTTGAGGAGTTATGTGCCGAT 1525709 Query 552045 CTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAA 552104 || || | || |||||||||| || | | |||| ||| | ||| | |||||| Sbjct 1525708 CTTTTCCGCTCTACTCTTGAACCAGTTGAGAAGGCATTAACCGATGCCAAGTTGGATAAA 1525649 Query 552105 ---TCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 |||| | ||||| || || || ||||| || || || ||||||| ||||| | Sbjct 1525648 AAATCCA---TTCATGATATCGTACTGGTTGGAGGTTCCACTCGAATTCCCAAAATCCAG 1525592 Query 552162 GAAATGTT----AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGA 552217 | || || ||||| | | || || || | ||| ||||||| || Sbjct 1525591 TCTCTCTTGCAAAATTTCTTCTGT----GGAAAGCAACTGAATCTTTCGATTAATCCTGA 1525536 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA------AC 552271 ||||||||||| ||||| ||||| | ||||| ||||| ||| | || || || Sbjct 1525535 CGAGGCTGTTGCTTATGGCGCCGCCGTCCAAGCTGCTATCCTTACCGGGGAAGGAAGCAC 1525476 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | | | || || || | | || ||||| ||||| || ||| | || | || Sbjct 1525475 GAGCGCTGCATTGCAGGATGTTCTTTTGGTGGATGTCACTCCACTTTCTTTGGGCATTGA 1525416 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 ||| | ||| || ||||||| || | || || | ||| || ||||||||||| | Sbjct 1525415 AACTGCTGGTGGGGTTATGACCAACATCATTGAACGCAATGCTCGCATTCCTTGTAAGCA 1525356 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 ||| ||| | || | | | || ||||| ||||||||||||||||| | || || Sbjct 1525355 GACTCAAACGTTTACAACATTTGCTGACAATCAGCCTGCTGTTACAATTCAAGTATTCGA 1525296 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 || ||| || | | || ||||| || || || || || ||| | ||| || || Sbjct 1525295 GGGCGAACGAGCAATGACCAAAGACAACAACTTGCTGGGAACATTTGAGTTAACTGGAAT 1525236 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 | |||| || || | || || || | |||||||| || || ||| | ||||||||||| Sbjct 1525235 TGCTCCAGCACCAAGAGGTGTTCCAAAGATTGAAGTCACATTTGATTTGGATGCCAATGG 1525176 Query 552572 AATTTTGAATGTGACTGC 552589 |||| || |||| || || Sbjct 1525175 AATTCTGCATGTCACAGC 1525158 >seq113 Length=2554746 Score = 125 bits (138), Expect = 6e-23 Identities = 148/198 (75%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 550344 TTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA----GTTACGGAT 550399 |||| |||||||||||| | |||||| || | | ||| || | || | | || Sbjct 1884885 TTTTGATGAAAATGAAAGAGACAGCCGAGGCATAT-TTG---AATACTTCGGTAAAGAAT 1884830 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| |||||||||| ||||| || ||||| || || | ||||| ||||| |||||| Sbjct 1884829 GCAGTCGTAACTGTACCTGCATACTTCAATGATTCTCAGAGACAAGCAACTAAGGATGCT 1884770 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 |||| |||||||| || ||||||||||| ||||||| || || || || ||||| || Sbjct 1884769 GGACAGATTGCTGGTCTAAATGTTCTTCGAGTTATCAACGAGCCGACGGCAGCTGCGCTG 1884710 Query 550520 GCATATGGACTTGATAAA 550537 ||||| || | |||||| Sbjct 1884709 GCATACGGCTTGGATAAA 1884692 >seq116 Length=4125705 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||||||||| || | || || | |||||| ||||| || || ||||| || | ||| Sbjct 2790509 AATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCT 2790450 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||||| |||||||| ||||||||||| ||||| || ||| || ||||| || Sbjct 2790449 CTGCTGATCCGGAGGAATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGT 2790390 Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 || | | | || ||| | || | ||||| ||||| || ||||||||||| || | Sbjct 2790389 GTC-GGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCT 2790331 Query 563471 GCAT 563474 |||| Sbjct 2790330 GCAT 2790327 Score = 86.0 bits (94), Expect = 5e-11 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || ||||| | ||| ||||| ||| | ||| || |||||||| | || || | Sbjct 2791000 AGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGG--ATGTTGTAATCGGATAATGTGC 2790943 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||| || |||||||| || || || || |||| || || || || |||||||||| Sbjct 2790942 GTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTT 2790883 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGA 563433 | |||||||||||||| ||||| ||| || || || | | || ||| ||| Sbjct 2790882 CCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGAC-TTCCAGA 2790824 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||||| || || || || || ||||| || |||||| Sbjct 2790823 GTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCATA 2790782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029246500098640