Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq38 113 5e-20 >seq38 Length=2292016 Score = 113 bits (124), Expect = 5e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 |||||||| || ||||||| | |||||||||||| |||| |||||| ||||| | || Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || |||||||| || | |||||| | | ||| || || | | ||||| | | | Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGA 218825 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || |||||| ||| |||||||| ||||| |||| | || |||||| Sbjct 218824 TTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGGACATGTGAAAT-AAATGT 218766 Query 37626 -CTTTCATCAT 37635 | ||| |||| Sbjct 218765 ACGTTCGTCAT 218755 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||| || | ||||||| |||||| | || ||||| | ||||||||||| Sbjct 219269 TCATCTCTAGAAATAAGTTCATTACTAAAGGTAAGGCCAGGCATGAGTCCTCTTTTTTTC 219210 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || ||||||||| ||| |||||||||||| || || || ||||| || Sbjct 219209 AACCAGAAAATAGCTGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCAGCAAAGGCC 219150 Query 37320 ACAAGACG 37327 |||| ||| Sbjct 219149 ACAACACG 219142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 |||||| ||||||||| || ||||||||||| || || | ||||| |||| |||| Sbjct 219560 TAATTCGACCAGAAGCCTGTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTT 219501 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGC 37111 |||||||| | || ||||| | |||||| | |||| || ||||||| || || Sbjct 219500 CATACCAATCATTTCAACTGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGC 219441 Query 37112 ATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA-AATA--TTTAAA 37168 || || |||| | |||| ||| | | || | || || |||| |||||| Sbjct 219440 ATTCTT---TATAATGGATGTAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAA 219384 Query 37169 CAATAAACATGCAAAATCACAATGTAAACC 37198 || ||||| ||||| |||||||| ||||| Sbjct 219383 CATCAAACACGCAAAGTCACAATGCAAACC 219354 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||| || |||||||| |||||| |||| || || |||||||| ||||| | Sbjct 219781 CATCACTCCCCACTTCTGATATTCACCAACTT-TCTTCTCAAAGAAATTTGTTTTTCCCT 219723 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | || || |||| ||||||||||||||||||||| Sbjct 219722 CAAGGGAAATATGTTCCATAAAATCAAATGGATT 219689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592309869893440