Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq116 138 9e-28 seq23 89.7 4e-13 >seq116 Length=4125705 Score = 138 bits (152), Expect = 9e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || |||||||| |||| || || | | |||| || | ||| Sbjct 2790530 ATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTG 2790471 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || || | ||| ||||| || ||||||||||||||||| ||||| || Sbjct 2790470 CTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGAATCTT 2790411 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || |||| | ||||| |||| |||||||| | |||| |||||||| || Sbjct 2790410 AGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAGT 2790351 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 | ||||| || || ||||||||| | | ||||| Sbjct 2790350 GAGCGTTTTAACGAAGATCTGCATGCCTCCACGAAG 2790315 Score = 125 bits (138), Expect = 6e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || || |||||||||| | ||| | | || |||| |||| Sbjct 2789406 TGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGTTGC 2789347 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||| | ||| |||||||| ||||| || || ||||||||||| || Sbjct 2789346 TTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTC 2789287 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| |||| | |||||| || | || || || || || | || || || || Sbjct 2789286 ACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTCCCAGTC 2789227 Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473 || || || ||||| ||||||||| || Sbjct 2789226 AATGTCTTGACAAAAATCTGCATGTTT 2789200 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| ||||| || || || || || |||||||||| | || | |||| || Sbjct 2790991 ACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCCTCG 2790932 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || || | |||||||| || || ||||| ||||| ||||||||| Sbjct 2790931 AGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGA 2790872 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||| | || | ||||| |||| || ||||| ||||||| ||||| Sbjct 2790871 ATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTC 2790812 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || |||||||| Sbjct 2790811 CCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 >seq23 Length=3064571 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 || |||||||||||||| ||| ||| ||| |||| | || ||||| | ||| || ||| Sbjct 1521584 CCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCGATGGTATCAGAGGCTTCAACCTCA 1521643 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || | || || || |||||||| |||||||| ||||||||||| Sbjct 1521644 AGGGTAATGGTCTTCCCCGTTAAAGTCTTTACAAAAATCTGCATGGT 1521690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273879454152