Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq116 107 1e-18 seq20 82.4 6e-11 >seq116 Length=4125705 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || || || ||||| |||||||||||| ||||||||||||| | ||| | || || Sbjct 2790079 ACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCT 2790020 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| ||||| || |||| | |||||||| | ||||| || || ||||| | Sbjct 2790019 AACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGA 2789960 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || ||||||||||||| ||||| || || Sbjct 2789959 ATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTG 2789900 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| |||||||| Sbjct 2789899 CCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| || || || ||| || || || |||||||| || | | | || Sbjct 2789421 AGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 2789362 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| ||||| || |||| | ||| ||||| | |||| |||||| Sbjct 2789361 CCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCC 2789302 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| |||||| | | || || || ||||| ||||| | ||| Sbjct 2789301 TTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTA 2789242 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || |||||||||||||| Sbjct 2789241 ATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 2789204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| ||| | |||||| ||||| ||||| || || || ||||| | || ||| Sbjct 2790763 ACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCC 2790704 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || || | | ||| || || | || | || ||||| || | Sbjct 2790703 AATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGA 2790644 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| || | | | || || || |||||||||| || ||||| || Sbjct 2790643 ATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTTG 2790584 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| | ||||| ||||||||||||||| Sbjct 2790583 CCCGTAAGGGTTTTGACAAAAATCTGCATC 2790554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || || | || |||||||| ||| ||| || || || |||||||| || Sbjct 2791010 GCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 2790951 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | || || || || || || ||||||||||| |||| ||| Sbjct 2790950 TAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGG 2790891 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || ||||| || ||| || ||||| | | | || |||||||| || Sbjct 2790890 AATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGAC 2790831 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || | || || || || |||||||| Sbjct 2790830 TTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 >seq20 Length=2461668 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 48561 AAATGTAGCG-TGCTCT--CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||| ||| || |||| | |||| || || || || ||||| || | | | || ||| Sbjct 1189146 AAAGGTATCGATGCTTTACCTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCC 1189087 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || || || ||||| ||||||| |||| |||||||||||| Sbjct 1189086 AACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGG 1189027 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | || |||||||||||||| | || || || || Sbjct 1189026 ATCTTAGCTTTGACGTTCTCGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTG 1188967 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || || || |||||||| Sbjct 1188966 CCTGTTAGGGTCTTCACGAAGATCTGCAT 1188938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933254454328