Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 244 7e-59 seq258 176 3e-38 seq113 98.7 6e-15 seq116 87.8 1e-11 seq20 87.8 1e-11 >seq23 Length=3064571 Score = 244 bits (270), Expect = 7e-59 Identities = 409/588 (70%), Gaps = 5/588 (1%) Strand=Plus/Minus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || || ||||| ||||| || || ||| || | |||||||| | ||||| || ||| Sbjct 1526614 GGAATAGATTTGGGAACGACGTATTCTTGCGTTGGAGTTTGGCAGCAAGGTAAGGTGGAA 1526555 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 |||||||| || || ||||| |||||||| || || ||||| | ||||| || || Sbjct 1526554 ATAATTGCTAACGATCAAGGGAATAGAACCACCCCGAGTTATGTGGCATTTACCGACACC 1526495 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| || || ||||||||||| ||| | |||| ||| || |||| |||||| | Sbjct 1526494 GAACGCCTCATCGGAGATGCTGCGAAAAACCAAGTTGCTATGAACCCTGCAAATACTGTC 1526435 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 || ||||||||| | ||||| || | || ||||| | | ||| ||||| Sbjct 1526434 TTCGATGCTAAACGTTTGATCGGAAGACGTTACGATGACCAAAAGATTCAAGACGATATA 1526375 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATACAC 474634 || |||||||||||||| | || | ||| || |||||| | ||||| | | | Sbjct 1526374 AAGCACTGGCCTTTTAAGGTAGTGAACGATGGAGGGAAACCAAAGATAGAGGTAGAGTTC 1526315 Query 474635 GCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATG 474694 |||||||| || |||| || || | || ||| |||||| | | || ||| Sbjct 1526314 CGAGGTGAAATCAAGAAATTCAATCCCGAGGAGATCAGTTCCATGGTTCTGTCAAAGATG 1526255 Query 474695 AAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCA 474754 | | | | ||| | || || || | |||| || || || || ||||| ||||| Sbjct 1526254 AGAGAGATCGCTGAAGCCTACCTGGGGAAGAAAGTCACCGAAGCTGTGATTACAGTTCCG 1526195 Query 474755 GCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTT 474814 || || ||||||||||| || || ||||| ||||| ||||| || | ||||| |||||| Sbjct 1526194 GCTTACTTTAATGATTCCCAGCGACAAGCTACTAAGGATGCTGGTACTATTGCTGGTCTT 1526135 Query 474815 AATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874 || || | | |||||||| || ||||| || || || ||||| ||||| |||||||| Sbjct 1526134 AACGTCCTTAGGATTATTAACGAGCCAACCGCTGCTGCTCTTGCCTATGGACTTGATAAA 1526075 Query 474875 AATTCTGACA-AAGAAGTAAATGTTTTAATCTTTGATT---GTGGAGG 474918 |||| ||| | |||| ||| || || || ||||||| ||||||| Sbjct 1526074 AATT-TGAAAGGAGAAAGAAACGTCTTGATTTTTGATTTGGGTGGAGG 1526028 Score = 141 bits (156), Expect = 6e-28 Identities = 267/388 (69%), Gaps = 10/388 (3%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT-TTATCAGGTCA 475851 |||||||| || |||||||| ||||| || || |||||||| ||||| ||| | || | Sbjct 1525543 AATCCTGACGAGGCTGTTGCTTATGGCGCCGCCGTCCAAGCTGCTATCCTTACCGGGGAA 1525484 Query 475852 ATCAG-ACGAGAA----ACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTA 475906 || ||||| | | | || || | | || || || ||||||||||| || Sbjct 1525483 GGAAGCACGAGCGCTGCATTGCAGGATGTTCTTTTGGTGGATGTCACTCCACTTTCTTTG 1525424 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 || ||||||| | ||| ||| ||||||| || | ||||| | ||| ||| || || Sbjct 1525423 GGCATTGAAACTGCTGGTGGGGTTATGACCAACATCATTGAACGCAATGCTCGCATTCCT 1525364 Query 475967 TGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 || || | | ||||| | ||| | || | | |||| ||||| | |||| || || | Sbjct 1525363 TGTAAGCAGACTCAAACG--TTTACAACATTTGCTGACAATCAGCCTGCTGTTACAATTC 1525306 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084 || | || || || ||| || | | || ||||| || ||| || ||||| ||| | Sbjct 1525305 AAGTATTCGAGGGCGAACGAGCAATGACCAAAGACAACAACTTGCTGGGAACATTTGAGT 1525246 Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | || ||| |||| || || ||||| ||||| | |||||||| || |||||| | | Sbjct 1525245 TAACTGGAATTGCTCCAGCACCAAGAGGTGTTCCAAAGATTGAAGTCACATTTGATTTGG 1525186 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGC 476172 |||| ||||| ||||| |||| || || Sbjct 1525185 ATGCCAATGGAATTCTGCATGTCACAGC 1525158 >seq258 Length=87302 Score = 176 bits (194), Expect = 3e-38 Identities = 401/593 (68%), Gaps = 24/593 (4%) Strand=Plus/Plus Query 297085 TTTGATAATTGGTTACAATCTTCAGTGGATTGGTGTATTTCAAGAAGTAGATATTGGGGA 297144 |||| ||||||| | || | | ||| ||| | | || |||| | | |||||||| Sbjct 8374 TTTGGTAATTGGCTGAAAGATGCTAGGGACTGGGCTGTCTCTAGAAATCGTTATTGGGGT 8433 Query 297145 ACACCAATTCCAATTTGGAAATCTGATGATGGTGAAGAAATAATTTGTATTGGTTCACTT 297204 | || || ||| | |||| |||||| ||| | ||||||| | |||||||| | Sbjct 8434 AATCCTATACCACTGTGGATATCTGAAGATAGAAAAGAAATTGTATGTATTGGAAGCATC 8493 Query 297205 GAAGAATTAAAAGAATTTTCAGGAATTGATAATATTAATGATTTACATATTGATAAAATT 297264 ||||| | |||| || || || | | | |||| | ||| | ||| || | ||| Sbjct 8494 AAAGAACTGGAAGAGTTATCTGGTACTAA-AATA--ACTGACATTCATCGGGAAAGCATT 8550 Query 297265 GATCAAATAAAAATTCCTTC---TCGTAAAGGAAAAGGCATGTTATCTCGTGTTACCGGT 297321 ||| | | ||||| || ||| |||| || |||| ||| ||| | | Sbjct 8551 GATACTTTGACTATTCCATCAAATCGACCAGGACAACCACCTTTATATCGAGTTTCAGAG 8610 Query 297322 GTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTT 297381 ||||| ||||||||||||||||| || ||||||||||| | |||| | |||||||| ||| Sbjct 8611 GTTTTCGATTGTTGGTTTGAATCGGGATCTATGCCTTACGCTCAATTACATTATCCATTT 8670 Query 297382 GA--AAATTCCGAAATTTTAGACACTTCACAAGATTATATTGCAGATTTTATAACAGAAT 297439 || | || ||| ||| | | | ||| || | ||| ||||| || ||||| Sbjct 8671 GAGCACATCAAGAACTTTGA------TGA-AAGCTT-TCCTGCTGATTTCATTGCAGAAG 8722 Query 297440 CAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTA 297499 ||| || || || | |||||||| || ||| | |||| | || ||||| | ||| Sbjct 8723 GAATAGACCAGACTCGTGGTTGGTTCTACACTCTGCTAGTCATATCAACAGCACTTTTTG 8782 Query 297500 ACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAA 297559 ||||| || ||||||||| || ||| || || | || ||| | |||||||||| Sbjct 8783 GAAAACCTGCCTTTAAAAATTTAGTTGCTAATGGCTTAGTATTAGCATCAGATGGACAAA 8842 Query 297560 AAATGTCAAAAAGTAAAGGTAATTATCCTGATCCAA---ATATTTTGATGGATAAATATG 297616 ||||||||||| | ||| |||||||| ||||||| | ||| || | | |||| Sbjct 8843 AAATGTCAAAACGGAAAAAGAATTATCCAGATCCAATGGAAATT---ATTAAACAGTATG 8899 Query 297617 GTGCAGATACTTTACGTCTTTA-TTTATTATCAACACCTGTAGTTAAAGCCGA 297668 | |||||| | ||||||||||| || |||| | | || || || ||||| || Sbjct 8900 GAGCAGATGCATTACGTCTTTACTTAATTAAC-TCTCCAGTTGTAAAAGCAGA 8951 Score = 118 bits (130), Expect = 7e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 296068 GAGAGAATTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTT 296127 || ||||||||| | ||||| ||| || | ||||| |||||||| | || | | | Sbjct 7447 GAAAGAATTGGACGTTGGATCGATTTTGAAAATGATTATAAAACCTTATATCCATGGTAT 7506 Query 296128 ATGGAATCTGTTATTTGGTCATTTAAACAACTTTATGAAAAGGAAATGATTTTTGAAGGT 296187 ||||||||| || ||| ||||||| |||| || | |||| | || | | | |||| Sbjct 7507 ATGGAATCTATTTGGTGGGTATTTAAAGAACTATACAACAAGGGACTGGTATATCAAGGA 7566 Query 296188 TATAAAGTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAA 296247 || || ||||||| |||||| || || ||||| ||||||||| ||||||| | Sbjct 7567 GTAAAGGTAATGCCTTTTTCTACAGGGTGTAATACCCCATTATCTAATTTTGAATCTGGT 7626 Query 296248 CAAAATTATAAAGAGATTATTGATCCATCT 296277 ||||||||||| ||| | | |||||| ||| Sbjct 7627 CAAAATTATAAGGAGGTGACTGATCCTTCT 7656 >seq113 Length=2554746 Score = 98.7 bits (108), Expect = 6e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | ||||| || ||||| || ||||||||||| | ||||||||||| |||| Sbjct 1884831 ATGCAGTCGTAACTGTACCTGCATACTTCAATGATTCTCAGAGACAAGCAACTAAGGATG 1884772 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| |||||| | || |||| || || || || ||||| || | Sbjct 1884771 CTGGACAGATTGCTGGTCTAAATGTTCTTCGAGTTATCAACGAGCCGACGGCAGCTGCGC 1884712 Query 474855 TTGCTTATGGTCTTGATAA 474873 | || || || | ||||| Sbjct 1884711 TGGCATACGGCTTGGATAA 1884693 >seq116 Length=4125705 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || | ||| || ||| ||| || || ||||||||||| || || Sbjct 2790320 ACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGT 2790261 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | |||||| ||||| || || | | || || || || || ||||| Sbjct 2790260 GCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCC 2790201 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| || ||||| ||| || ||||| ||||| | || | | | ||| Sbjct 2790200 TTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAA 2790141 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || ||||||||||| || || || Sbjct 2790140 -AGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTG 2790102 >seq20 Length=2461668 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || ||| |||||| | ||||||||||| || || ||||| || Sbjct 1189116 TTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGC 1189057 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||| || |||||||| || ||||| |||||| || || ||||| Sbjct 1189056 TGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCGATGGTATCG 1188997 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||||| || || || || || || ||||| ||||| || || Sbjct 1188996 GACGCCTCCA-CCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGAAGATCTG 1188941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268139050418528