Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq116 145 1e-29 >seq116 Length=4125705 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | | |||||| || ||||||| || | ||| || |||||| |||||| Sbjct 2790556 ATCCCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCG 2790497 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||| || || ||||| ||||||||||| ||||| ||| Sbjct 2790496 GAGAGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGA 2790437 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || ||||| | ||| ||| || ||||| | ||| Sbjct 2790436 GGAATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCC 2790377 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||| || || ||||| || || |||||||| || || || ||||| Sbjct 2790376 ACTTCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | | |||||| |||| ||| | | | |||||| ||| || ||||| Sbjct 2790784 ATACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCT 2790725 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| | ||| || ||||||||||| || || ||||| ||||| || || || Sbjct 2790724 GAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGC 2790665 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || ||||||| ||| | ||| || || || || | || Sbjct 2790664 GGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCC 2790605 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||| || || || || || ||||| ||||| || ||||| Sbjct 2790604 ACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || ||||| || | || | ||| || || ||||||||| Sbjct 2789872 ATTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCG 2789813 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| || | ||| |||| || || |||||||| || | |||||| || || || Sbjct 2789812 GATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGT 2789753 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || || | |||| ||| || || ||||||| ||| Sbjct 2789752 GGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCG 2789693 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || || || ||||| || |||||| Sbjct 2789692 ACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 105 bits (116), Expect = 1e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 193169 CTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAA 193228 |||||| ||| || || || ||||| || | | ||| ||||| || || ||||| || Sbjct 2790062 CTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAA 2790003 Query 193229 AATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATT 193288 || || || |||||||| || || ||||||||||| || || || |||| || | || Sbjct 2790002 GATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTT 2789943 Query 193289 TAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 | ||| || ||||| | ||| || || | || || || || ||||| || || || || Sbjct 2789942 TTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAAC 2789883 Query 193349 AAATATTTGCATT 193361 ||| || |||||| Sbjct 2789882 AAAGATCTGCATT 2789870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899643874043520