Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05]
936 sequences; 201,220,334 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq116 116 5e-21
seq38 111 2e-19
>seq116
Length=4125705
Score = 116 bits (128), Expect = 5e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || ||||||| | ||||| ||||| || || |||||||| || | ||
Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||| |||| ||| || || |||||||||||||| ||||| || ||
Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| ||||| || | ||| || ||||| ||||||||| | | || | || || || |||
Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506
Query 156003 AT 156004
||
Sbjct 2790507 AT 2790508
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || ||||||||||| || || ||||| | || ||||| | |||
Sbjct 2789204 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTCC 2789263
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||| || || || || |||||||| || || || || || || ||
Sbjct 2789264 GACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAG 2789323
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||| | ||||| ||||| || || || | ||||| || ||||| ||
Sbjct 2789324 CAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAAC 2789383
Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025
|| || ||| |||| |||||
Sbjct 2789384 ATCCAGAAGGAGTCGACCCTTCA 2789406
Score = 89.7 bits (98), Expect = 8e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| |||| || | || || || || || || || || ||||||| ||
Sbjct 2790098 AATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATC 2790157
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|||| ||| ||||| ||| ||| || || || || ||||| || || || || ||
Sbjct 2790158 CGATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| |||||||| | || || ||||| | |||||| | || | || ||||||||
Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277
Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031
||| || ||| || | || || ||||||||
Sbjct 2790278 TAT-TCAAAAGGAATCTACTCTGCATTTAGT 2790307
>seq38
Length=2292016
Score = 111 bits (122), Expect = 2e-19
Identities = 175/247 (71%), Gaps = 3/247 (1%)
Strand=Plus/Minus
Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469
|||| |||||| || | ||||||||||| |||| | |||||||||||||||||| |
Sbjct 218961 TTTTTTTTGGA-TCACTGATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACA 218903
Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529
|||||||||| | || || | |||||| ||| ||| || | | ||| | || |
Sbjct 218902 TTTTCCATAGCCACTTGGAATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGA 218843
Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589
||| | |||||| | ||| ||||| || ||||| |||| || || || ||||| |
Sbjct 218842 CTAAACCGTTCTACAAGATTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGG 218783
Query 18590 ACATATTTAATGAAATGT-TTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTT 18648
|||| | ||| |||||| ||| | ||| || || || ||| ||| |||||| |
Sbjct 218782 ACATGTGAAAT-AAATGTACGTTCGTCATCTTTTAGGCTGAGCCAGTCAGGTATATCCTG 218724
Query 18649 TGATAGA 18655
||| |||
Sbjct 218723 TGAAAGA 218717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731863437097600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |