Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq116 116 5e-21 seq38 111 2e-19 >seq116 Length=4125705 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || ||||||| | ||||| ||||| || || |||||||| || | || Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| |||| ||| || || |||||||||||||| ||||| || || Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| || ||||| ||||||||| | | || | || || || ||| Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 156003 AT 156004 || Sbjct 2790507 AT 2790508 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || ||||| | || ||||| | ||| Sbjct 2789204 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTCC 2789263 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || || || || |||||||| || || || || || || || Sbjct 2789264 GACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAG 2789323 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| ||||| || || || | ||||| || ||||| || Sbjct 2789324 CAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAAC 2789383 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || || ||| |||| ||||| Sbjct 2789384 ATCCAGAAGGAGTCGACCCTTCA 2789406 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || | || || || || || || || || ||||||| || Sbjct 2790098 AATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATC 2790157 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| ||| ||| || || || || ||||| || || || || || Sbjct 2790158 CGATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | || || ||||| | |||||| | || | || |||||||| Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 ||| || ||| || | || || |||||||| Sbjct 2790278 TAT-TCAAAAGGAATCTACTCTGCATTTAGT 2790307 >seq38 Length=2292016 Score = 111 bits (122), Expect = 2e-19 Identities = 175/247 (71%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||| |||||| || | ||||||||||| |||| | |||||||||||||||||| | Sbjct 218961 TTTTTTTTGGA-TCACTGATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACA 218903 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 |||||||||| | || || | |||||| ||| ||| || | | ||| | || | Sbjct 218902 TTTTCCATAGCCACTTGGAATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGA 218843 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 ||| | |||||| | ||| ||||| || ||||| |||| || || || ||||| | Sbjct 218842 CTAAACCGTTCTACAAGATTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGG 218783 Query 18590 ACATATTTAATGAAATGT-TTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTT 18648 |||| | ||| |||||| ||| | ||| || || || ||| ||| |||||| | Sbjct 218782 ACATGTGAAAT-AAATGTACGTTCGTCATCTTTTAGGCTGAGCCAGTCAGGTATATCCTG 218724 Query 18649 TGATAGA 18655 ||| ||| Sbjct 218723 TGAAAGA 218717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731863437097600