Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq116 134 3e-26 seq38 102 2e-16 seq23 98.7 2e-15 >seq116 Length=4125705 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | ||| || | ||||||||||| || | ||| || ||| || ||||| ||| Sbjct 2791009 CCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGAT 2790950 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| ||| |||| || | |||||| ||||| ||||| | || |||||| || || || Sbjct 2790949 AATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGA 2790890 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| |||||||| ||||| ||||| || || | || |||| || ||| Sbjct 2790889 ATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACT 2790830 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| || || | || || | || |||||||| Sbjct 2790829 TCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 132 bits (146), Expect = 9e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || || | ||| || | |||||||| | ||||| || ||| || ||||||||||| Sbjct 2790328 ATGCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGA-ATATTATAATC 2790270 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||| | || || |||| || ||||| || ||||| ||||| |||||||| || || || Sbjct 2790269 AGACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGG 2790210 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| || || || || ||| ||| || || || | ||| || | ||| Sbjct 2790209 TGGGATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTC 2790150 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||| ||||| || | || |||| ||| ||||||||| Sbjct 2790149 GACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | || | ||| | ||| | ||| || ||||| || || Sbjct 2790556 ATCCCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCG 2790497 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||| || |||||||||||||||||||| ||||| || Sbjct 2790496 GAGAGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGA 2790437 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || ||| |||| || || || | || |||| || Sbjct 2790436 GGAATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCC 2790377 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||| || || ||||| ||||| | ||||||| || |||||||| Sbjct 2790376 ACTTCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||| | | ||||| || | || | |||||| || || |||||| Sbjct 2790100 ATTCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCA 2790041 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || || || || || || ||||| || || |||||||| || Sbjct 2790040 GATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGG 2789981 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || || || || || || || | || || | || Sbjct 2789980 GGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCC 2789921 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||||| || || || | || |||| ||| ||||||||| Sbjct 2789920 ACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||| || | || ||||| | | | |||||| || || || || Sbjct 2790784 ATACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCT 2790725 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| ||||||||||| ||||| |||||||| ||||| || || || Sbjct 2790724 GAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGC 2790665 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || ||||| ||| || || || | || || | ||| Sbjct 2790664 GGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCC 2790605 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || || || || || || | ||||| | ||| |||||||| Sbjct 2790604 ACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 >seq38 Length=2292016 Score = 102 bits (112), Expect = 2e-16 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||||| |||| |||||||||||| || | || ||||| | |||||| |||| Sbjct 219271 CCTCATCTCTAGAAATAAGTTCATTACTAAAGGTAAGGCCAGGCATGAGTCCTCTTTTTT 219212 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | | ||| || || | ||||||||| | | |||||| |||||||| ||| ||||| | Sbjct 219211 TCAACCAGAAAATAGCTGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCAGCAAAGG 219152 Query 49966 CTATTATTCTTGCTCCAAA---CATTAATTTATCATCTAATATCCAATTTATAGCCCAAT 50022 | | | | | ||||| | ||| || || || |||||||||| ||||| | Sbjct 219151 CCACAACACGCTCCCCAAATGTCGCGGATTCATGAT-TA--ATCCAATTTAGTGCCCAGT 219095 Query 50023 CTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 |||||| || || | | || | ||||| || || |||||||| Sbjct 219094 TTGCTTTCTTAGCGACACATGGAAGGTTTTCAATGGCATTAAATAA 219049 Score = 93.3 bits (102), Expect = 8e-14 Identities = 133/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 |||| || |||||||||||||||||| ||| ||||||||| | ||| ||| |||||| Sbjct 218932 ATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGGAATCCATAAAAG 218873 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 || ||||| | | || ||||| | || ||||| || | ||| ||| || Sbjct 218872 CATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGATTTTCATTGACG 218813 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGT-TTTTCATTATC 50284 ||||||||||| || || |||||||| | || | | ||| |||||| ||| | ||| Sbjct 218812 ATACCATCAGAAGCAGCAAAGAATGCAAGGACATGTGAAAT-AAATGTACGTTCGTCATC 218754 Query 50285 TTTTA 50289 ||||| Sbjct 218753 TTTTA 218749 >seq23 Length=3064571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | ||||| || ||||| || | ||| || |||||| ||||| || Sbjct 1521382 CCACCTCTCAGCCTCAATACCAAGTGTAACGTTGACTCCTTTTGGATATTGTAATCCGAC 1521441 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||| | |||| || | || ||||||||||| ||||| ||||| ||||||||||| Sbjct 1521442 AAAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTGATCAGGTGGA 1521501 Query 192430 ATTCCTT 192436 || |||| Sbjct 1521502 ATGCCTT 1521508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984468193623600