Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq116 125 1e-23 seq38 98.7 2e-15 seq23 89.7 9e-13 >seq116 Length=4125705 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | ||||||||||| || | ||| || || || ||||| ||| Sbjct 2791009 CCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGAT 2790950 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | ||| | || || | |||||| ||||| || || | || ||||||||| || || Sbjct 2790949 AATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGA 2790890 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| |||||||| ||||| ||||| || || || || |||| || ||| Sbjct 2790889 ATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACT 2790830 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| |||||||| || || | || || | ||| |||||||| Sbjct 2790829 TCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | |||||| | |||||||| | ||||| || || |||||||||||| Sbjct 2790328 ATGCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCA 2790269 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || ||||| || ||||| || || |||||||| ||||| ||| Sbjct 2790268 GACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGT 2790209 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || || || || ||| ||| || || || ||||| || | ||| Sbjct 2790208 GGGATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCG 2790149 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||| ||||| ||||| || | || |||| || ||||||||| Sbjct 2790148 ACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | |||||| | || | ||| | ||| | ||| || |||||| || || Sbjct 2790556 ATCCCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCG 2790497 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | ||| || |||||||| ||||||||||| || || || Sbjct 2790496 GAGAGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGA 2790437 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || ||| |||| || || || || || |||| || Sbjct 2790436 GGAATGCCTTCTTTATCCTGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCC 2790377 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || || ||||| ||||| | ||||||| ||| |||||||| Sbjct 2790376 ACTTCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | |||||| | || ||||| | | | |||||| ||| || || ||| Sbjct 2790784 ATACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCT 2790725 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || ||||||||||| ||||| || ||||| ||||| ||||| || Sbjct 2790724 GAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGC 2790665 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || ||||| ||| || || || || || || | ||| Sbjct 2790664 GGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCC 2790605 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || | ||||| | || |||||||| Sbjct 2790604 ACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 >seq38 Length=2292016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || || ||||| |||| |||||||||||| || | || ||||| | |||||| ||||| Sbjct 219269 TCATCTCTAGAAATAAGTTCATTACTAAAGGTAAGGCCAGGCATGAGTCCTCTTTTTTTC 219210 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 | ||| || || | ||||||||| | | |||||| |||||||| ||| ||||| || Sbjct 219209 AACCAGAAAATAGCTGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCAGCAAAGGCC 219150 Query 39270 ATTATTCTTGCTCCAAA---CATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCT 39326 | | | | ||||| | ||| || || ||||||||||| ||||| | | Sbjct 219149 ACAACACGCTCCCCAAATGTCGCGGATTCATGAT---TAATCCAATTTAGTGCCCAGTTT 219093 Query 39327 GCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 ||||| || || | | || | ||||| || || |||||||| Sbjct 219092 GCTTTCTTAGCGACACATGGAAGGTTTTCAATGGCATTAAATAA 219049 Score = 87.8 bits (96), Expect = 3e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 39416 AGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGC 39475 |||||||||||||||||| ||| ||||||||| | ||| ||| |||||| | || Sbjct 218924 AGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGGAATCCATAAAAGCATCGAGC 218865 Query 39476 TTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 39535 ||| | | || ||||| | || ||||| || | ||| ||| || |||||||| Sbjct 218864 TTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGATTTTCATTGACGATACCATC 218805 Query 39536 AGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGT-TTTTCATTATCTTTTA 39591 ||| || || |||||||| | |||| | ||| |||||| ||| | |||||||| Sbjct 218804 AGAAGCAGCAAAGAATGCAAGGACATGTGAAAT-AAATGTACGTTCGTCATCTTTTA 218749 >seq23 Length=3064571 Score = 89.7 bits (98), Expect = 9e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| || | ||||| || ||||| || | ||| || ||||| ||||| || Sbjct 1521382 CCACCTCTCAGCCTCAATACCAAGTGTAACGTTGACTCCTTTTGGATATTGTAATCCGAC 1521441 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | | || || | || ||||||||||||||||| ||||| || |||||||| Sbjct 1521442 AAAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTGATCAGGTGGA 1521501 Query 171963 ATTCCTT 171969 || |||| Sbjct 1521502 ATGCCTT 1521508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125409908800