Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq115 104 7e-17 seq55 84.2 6e-11 >seq115 Length=505698 Score = 104 bits (114), Expect = 7e-17 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||| ||| ||||||||||| |||||||| || ||||| || | || Sbjct 405903 TGGCCAATTGTCATTCGAGATGGAATAGCATGTGGATTGATAATTATGTCAGGAGTAAGA 405962 Query 251899 CCATCAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATA-GTTCCCTTTT 251956 || || ||| | ||| ||||| |||| || || ||| || | | | | |||||||||| Sbjct 405963 CCCTC-GCACGAGAATGGCATGTCCTCTTG-TCTATACTGAATACCACATGTTCCCTTTT 406020 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAA 252016 |||| || |||||| || ||||| ||||| ||| ||||||||| || | || | Sbjct 406021 GTCCATGTCGAGAAGCAAATTTATCTCCAATTTGTGGAATGCGAACACTCCGCACTCGGA 406080 Query 252017 CCTTACAGAAGTTGTAACCATCACCGTT 252044 ||||| || ||||| || |||| ||| Sbjct 406081 TTTTACAAAATTTGTATCCGTCACTGTT 406108 >seq55 Length=4851298 Score = 84.2 bits (92), Expect = 6e-11 Identities = 237/354 (67%), Gaps = 14/354 (4%) Strand=Plus/Plus Query 302497 CCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTGTTATTTCTTACGGTCATATCA 302556 ||||| |||||||| ||||||| | || | | |||||||||||| ||| Sbjct 1196351 CCGTCCTCGCCGTACCTTAACTGAATCAATTGACCCACGGAATTTCTTACGGTGCCATCG 1196410 Query 302557 TAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTA 302616 || | ||| | | |||||| |||||| | ||| || || ||||| || || Sbjct 1196411 TAGTGCACCATCACGGACTCCATAGCCTTGATCAGACGTCGTTGGATATATCCGGTCTCG 1196470 Query 302617 GATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGC 302676 | || || || || ||||| || ||||| | ||||| ||||| || |||| ||||| Sbjct 1196471 GCGGTCTTAACGGCGGTATCGATGAGACCCTCTCGACCTCCCATCGCGTGGA--AATAGA 1196528 Query 302677 TCTTCCG--GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG- 302732 | |||| | || | ||| ||| | | ||| | || ||||| || | | |||||| Sbjct 1196529 AC-TCCGAAGGAGTCAACCCAGCAAGATACGAGTTTTCTACGAAGCCTCTGGACTCGGGA 1196587 Query 302733 -CG-AATCGTCGAACTTGGTAAAGTGTGGCAG-GGTCCTGTTCTCATAGCCGTATGGGAT 302789 || |||| || |||| | || || || || | || |||| | | || ||||||| Sbjct 1196588 CCGTAATCATC---CTTGATGAAATGAGGAAGCGTTCGCTTTCTGA-ACCCAAATGGGAT 1196643 Query 302790 ACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| || || |||||||| || |||| ||| | || | ||| || ||||| Sbjct 1196644 TCGCTTACCCTCGACGTTCTGTTGACCCACGCAGGCGATAACCTGAGAGATATT 1196697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799949227432