Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq116 131 2e-25 seq20 93.3 4e-14 >seq116 Length=4125705 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || || || || || || || || || ||||| || || || Sbjct 2789643 ATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTCC 2789702 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||||||||| |||||||| || || || || Sbjct 2789703 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 2789762 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || ||||| |||||| | | | || || |||||| Sbjct 2789763 CAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAAC 2789822 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| ||||| || ||| |||| |||| |||| || || Sbjct 2789823 ATCCAAAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCGTGGTGG 2789869 Score = 131 bits (144), Expect = 2e-25 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || || || || ||||| | || || || || || Sbjct 2789871 ATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATCC 2789930 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || ||||| || |||||||||||||| || || |||||| Sbjct 2789931 GACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAA 2789990 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 ||| | |||||||| ||||| || ||| | || ||| ||| ||| | || ||||| Sbjct 2789991 CAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCG---CACATTATCTGATTAC 2790047 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || || || ||||| || Sbjct 2790048 AACATTCAAAAAGAGTCAACGCTTCACTTAGT 2790079 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || ||||| || || || | || || ||||| || Sbjct 2790099 ATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATCC 2790158 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| |||| | |||||||| ||||| |||||||| || ||||| || Sbjct 2790159 GATACCATTGAGAACGTTAAAGC-TAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || || | || ||| | | |||| |||||||| Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||||| || || || || || ||||| | || |||||| Sbjct 2790278 TATTCAAAAGGAATCTACTCTGCATTTAGTCCTGCGACTTCGTGGAGGC 2790326 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| ||||| || || || ||||| || || | Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || || ||||| || |||||||| || || || ||| Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || || | ||||| || |||||||| || ||||| | || ||| | || ||||| || Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGA-TGGACGCACATTATCCGATTACAA 2790961 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || ||||| || || | || | || |||||| Sbjct 2790962 CATCCAGAAGGAGTCCACCCTACATTTAGTACTTCGCCTTCGGGGAGGC 2791010 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||||||||| || || ||||| || || | ||||| || || || Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| || || |||||||| || ||||| ||||| Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || |||||||| || || || || || ||| | | | | || || || || Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| || || || || Sbjct 2790507 ATTCAGAAGGAGTCCACTCTGCA 2790529 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 24717 TTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAA 24776 |||| || || ||||| || || || || || ||||| || || |||| || | || | Sbjct 2789428 TTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCGAGA 2789487 Query 24777 CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCT 24836 || || |||||| || ||||| || ||||| || || ||||| || | | |||| Sbjct 2789488 ACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTCATCT 2789547 Query 24837 TTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 ||||||| || ||||| |||||| | | |||| || || ||||| || ||||| | Sbjct 2789548 TTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGT 2789607 Query 24897 CGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||| || ||| |||| |||| ||||||| || Sbjct 2789608 CGACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 2789641 Score = 91.5 bits (100), Expect = 1e-13 Identities = 190/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 138444 ATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTT 138503 |||| ||||||| ||||| ||| |||| | | | ||| || | ||||| ||| Sbjct 2591336 ATTTTTCATGTCTTCGTTCCACATATTCTGTTCCGTAAGGTCTTTCAACAGATGAGGGTT 2591395 Query 138504 TATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTC 138563 || || |||||| || |||| | ||||| || || ||||| ||||| | || || Sbjct 2591396 TACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTGTACGGTTC 2591455 Query 138564 AAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAA 138623 || |||||||||||||||| |||||| || || | || || ||||| || | | Sbjct 2591456 AATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGGGCGATAAG 2591515 Query 138624 AAGAGAATTCCGTAAACCGTG--AAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCAC 138681 | |||||| || | |||||| ||| ||| ||| || || | | ||||| ||| Sbjct 2591516 CAAAGAATTGCGAACACCGTGTTTTGCT--ATTTTTTCTTTCAGAGCTGCCCAGTTCCAA 2591573 Query 138682 AAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACAT 138722 | || | || || | ||||||||||||||| || || Sbjct 2591574 AGATTAGTCGGCGTTACGCCCCACATATCGTACTGCAAAAT 2591614 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||| |||| ||| || || |||| ||||| || || ||||| || || | Sbjct 2592110 ACAAACATGTTCACAGCTATGGAAGCTAAATTGCATACGGCTACTTCATCAGGACTGGAA 2592169 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || || ||||| | ||| | ||| || | || || || |||| |||||||||||| Sbjct 2592170 TACTCAACGATTTCTGTACAGAGATTGCTGCTTTTAATTGTGCCTAGATTTTGTTGATTC 2592229 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||| || || || |||||| || ||||| ||||| || |||||||| ||||| | | Sbjct 2592230 GATTTACGATTGCAGTGATCTTTATACAGCATGTACGGAGTTCCAGTTTCAACTTGGGCC 2592289 Query 139243 TCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGC 139284 || |||| ||| ||| | ||||| | ||||||| Sbjct 2592290 ATTAGAATGGCAGACCACAGGTCTCGAGCTTCCACTTGACGC 2592331 >seq20 Length=2461668 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| || || || || || ||||| || || || || Sbjct 1188938 ATGCAGATCTTCGTGAAGACCCTAACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCC 1188997 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||| ||||| || || || ||||| ||||| Sbjct 1188998 GATACCATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAG 1189057 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||| |||| ||| || | | || || |||||| Sbjct 1189058 CAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCAGGACGCTTTCTGACTATAAC 1189117 Query 24884 ATTCA-AAAGG 24893 || || ||||| Sbjct 1189118 ATCCAGAAAGG 1189128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892336198080