Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq69 313 2e-80 seq116 86.0 5e-12 >seq69 Length=1184719 Score = 313 bits (346), Expect = 2e-80 Identities = 340/451 (75%), Gaps = 0/451 (0%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 |||||||| ||||| ||| | ||||||||||| || | | ||| ||| || | | Sbjct 763880 GGCGGGTTCTTCAGGATGTACGTGTTGAGCTTGTGGTTGCTCTCGAGCAAGCCATGGTGA 763939 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| || ||||| ||||| ||||| | ||| || ||| || || ||||| ||| Sbjct 763940 CCGCAGGCCTTGCACCCCTGCGAGATAGTCCCCTTCTTCGCGCTGACCATCAGCTCGGTC 763999 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 |||||||| || || | |||||| | || |||| | ||||||||| || || |||||| Sbjct 764000 TCCGGGTTCTCGCAGTTCGGACAGAGGACGTACTTCCTGATGAAACCGTCGAGGAGGTCC 764059 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGACC 34443 || | ||| | |||||| |||||||| |||||||| || ||||| ||| | |||| | Sbjct 764060 TGGAGCTTGGTCGCGTCGTGCGAGCCGTTCACGATGAACCGCTCGTTCTTGAAGTCGAAC 764119 Query 34444 TGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCA 34503 || || ||||| || |||||||||||||||||||| |||||||| | ||||| | || Sbjct 764120 TGGGTCTGCGCCCCGAGCTCGCACCCGAAGTACTTGGTCGGGTAGGTCGCCGGTCTGCCG 764179 Query 34504 AGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCT 34563 | ||||||||| | ||| |||||| ||||| || ||||| || ||||| ||||| || Sbjct 764180 ATCGCCTTGGCCACGTCGACCATGTTCACGATCACCGTCTTAATCCCGTTCCCCTTGCCC 764239 Query 34564 TCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGG 34623 |||||||| || ||| |||||||| ||||| || ||||||||||| || | ||| Sbjct 764240 TCGACCTTCGCCTGGATCCGCGGCATCTTGTACCGATAGAACGCGTCGCTGACGCTCCGG 764299 Query 34624 TTAACGTTCACAGTCCCCATCGTGGCTGGTG 34654 || ||||| || |||||||| |||| |||| Sbjct 764300 TTCACGTTGACGCTCCCCATCTTGGCGGGTG 764330 >seq116 Length=4125705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || | || ||||| |||||||| | || |||| | Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || || |||||| ||||||||||| | ||| ||||| Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCA 2789989 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | || || || ||| | || |||| | ||| | | |||||||| Sbjct 2789990 ACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAA 2790049 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||| || ||| | ||| | || | || || ||||| |||| Sbjct 2790050 CATTCAAAAAGAGTCAACGCTTCACTTAGTCCTCAGGCTTCGAGGTGGAA 2790099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412836890509448