Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq116 132 3e-26 seq20 111 1e-19 >seq116 Length=4125705 Score = 132 bits (146), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | |||||||||||||| ||| |||||| || ||||||||||| | Sbjct 2789871 TTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGG 2789812 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | || |||| || || ||||| ||||| ||||| |||| ||||||||| | | Sbjct 2789811 ATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTG 2789752 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || || || || || || |||| || ||||| Sbjct 2789751 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTTAC--ATTCTCGATCGTGTCGGAAGCCTC 2789694 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | ||| |||||||| || ||||| ||||| ||||| |||||||| Sbjct 2789693 GACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 122 bits (134), Expect = 6e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | |||||||||||||| ||| ||||||||| ||||| ||||| | Sbjct 2789643 TTCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2789584 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || |||| |||| || || ||||| ||||| ||||| |||| ||||| ||| | | Sbjct 2789583 ACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTG 2789524 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||||||||| | || ||| || ||| | || | || ||||||| Sbjct 2789523 GAATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGA 2789464 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| |||||||| || || |||||||| || Sbjct 2789463 CTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| || || | || |||| |||| ||| ||||| ||||| Sbjct 2790746 CTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAA 2790687 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| | | ||||||||| |||| | ||| ||||| || | ||||| ||| ||| Sbjct 2790686 GATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTT 2790627 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || || || || || | |||||| ||||| ||||| ||||| || || Sbjct 2790626 TTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGAC 2790567 Query 34966 AAAGATCTGCAT 34977 ||| |||||||| Sbjct 2790566 AAAAATCTGCAT 2790555 Score = 107 bits (118), Expect = 1e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| ||| ||||||||| ||||| || || || | | || | || Sbjct 2789416 CAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTC 2789357 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||||||| ||||||||||||| | ||||| || | || | |||||||| || Sbjct 2789356 CTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATC 2789297 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || || | | || | || |||||||| || | ||| ||||| Sbjct 2789296 TTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGT 2789237 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || | ||||| ||||| ||||||||| Sbjct 2789236 CTTCCCAGTCAATGTCTTGACAAAAATCTGCATG 2789203 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 ||| ||||||| | | || || | || | |||| ||||||||| ||||| || || Sbjct 2791013 ATTGCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATC 2790954 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 |||| |||| |||| || ||||| || || |||||||| ||||| || ||||| | Sbjct 2790953 GGATAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGG 2790894 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTC 34926 || | || ||||| || | ||||| || ||| | |||| || ||||| Sbjct 2790893 GGGAATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTC 2790834 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | || ||||| || || ||||||||||| || ||||||||||| Sbjct 2790833 GACTTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | | ||| ||||| | ||||| || ||| || |||||||| || || | Sbjct 2790099 TTCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAG 2790040 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| |||| |||| || | ||||| ||||||||||||| | ||| || ||| | | Sbjct 2790039 ATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGG 2789980 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | || || || ||| | | || | || ||||| | Sbjct 2789979 GAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCA 2789920 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | || |||||||| || || |||||||| |||||||||||||| Sbjct 2789919 CCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| ||||| || || || |||| |||| || | |||||| || |||||| Sbjct 2790289 TCCTTTTGAATATTATAATCAGACAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAG 2790230 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||||| | || | || |||||||| | || || ||| ||| Sbjct 2790229 ATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTAGCTTTAACGTTC 2790170 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || ||||| || | || |||||||| || || || ||||| ||| Sbjct 2790169 TCAATGGTATCGGATGCTTCGACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACA 2790110 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 2790109 AAGATCTGCAT 2790099 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| |||||||||||| || ||||| || ||| | || |||| Sbjct 2790538 AGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCT 2790479 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || ||||| | || ||||| || | || | || || || || Sbjct 2790478 TCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCC 2790419 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||||| | | |||| || ||||| || || | ||| || || Sbjct 2790418 TGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTT 2790359 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| || || || |||||||||||| Sbjct 2790358 TTGCCAGTGAGCGTTTTAACGAAGATCTGCATG 2790326 >seq20 Length=2461668 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||| ||||||||||| || || | | |||| |||| |||||||| |||||||| Sbjct 1189125 TTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGATG 1189066 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 || || ||||| || | || | ||||||||||| | || || ||||||| | Sbjct 1189065 AGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCTCG 1189006 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || ||||| || || | ||| |||||||| || || |||||||| || ||| Sbjct 1189005 ATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGAAG 1188946 Query 34970 ATCTGCATGAT 34980 ||||||||||| Sbjct 1188945 ATCTGCATGAT 1188935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689084659384