Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq116 95.1 1e-14 seq23 93.3 3e-14 >seq116 Length=4125705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| || ||| | || ||||| ||||| ||| | ||| |||||| Sbjct 2789642 AATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTC 2789701 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | ||||| ||||| || || ||||| | || || || Sbjct 2789702 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 2789761 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | ||| || || ||||| ||||| | | || | | ||||| || Sbjct 2789762 GCAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAA 2789821 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| ||||||||||| || | ||| |||| || | |||| || |||| Sbjct 2789822 CATCCAAAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCGTGGTGGAA 2789871 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||||||||| || || || || || ||||||||| |||| |||||| Sbjct 2789201 AACATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCT 2789260 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| ||| | | | ||||| |||||| ||||| || || | || ||| Sbjct 2789261 TCCGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGAT 2789320 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| | || | || || || || |||||||||| || || | || ||| Sbjct 2789321 CAGCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTAC 2789380 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| || | ||| |||| Sbjct 2789381 AACATCCAGAAGGAGTCGACCCTTCACCTGGT 2789412 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| | || |||||||| || ||| | ||| |||||| | Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| |||||| |||||||||||| | || ||||||| Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || || || || || || | | || | | |||||||| Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| |||||||| || |||| Sbjct 2790507 ATTCAGAAGGAGTCCACTCTGCA 2790529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 107580 ACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAA 107639 || ||||| ||||| ||| | ||| |||||| |||||| ||| | || || | Sbjct 2789439 ACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCGAGAACGTGAAGGCA 2789498 Query 107640 AAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAA 107699 |||||| || || || || | || |||||||||||||| || | ||| || || Sbjct 2789499 AAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTCATCTTTGCCGGCAAG 2789558 Query 107700 CAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| ||||| | | || || | ||||||||||| || |||||||| || | ||| Sbjct 2789559 CAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCAC 2789618 Query 107760 ATGGTGTTGAGATTGCGAGGGGGAA 107784 |||| || | |||| || |||| Sbjct 2789619 CTGGTCCTGCGTCTGCGCGGTGGAA 2789643 >seq23 Length=3064571 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| | |||| ||| ||||| ||||| ||||| | | ||| || |||| Sbjct 1521494 GATCAGCAGAGGTTAATTTTTGCTGGTAAGCAGCTTGAGGATGGAAGAACTTTGTCGGAT 1521435 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || ||||||||||| ||||| ||| |||| ||||| || |||| ||| Sbjct 1521434 TACAATATCCAAAAGGAGTCAACGTTACACTTGGTATTGAGGCTGAGAGGTGGA 1521381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398872249812904