Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23 453 8e-122 seq88 107 1e-17 seq71 107 1e-17 seq4 107 1e-17 seq113 98.7 7e-15 seq55 91.5 1e-12 >seq23 Length=3064571 Score = 453 bits (502), Expect = 8e-122 Identities = 999/1478 (68%), Gaps = 37/1478 (3%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || |||| ||||| |||||||||||||||||||||||||||||||| | || || Sbjct 1525157 GGCTGTGACATGCAGAATTCCATTGGCATCCAAATCAAATGTGACTTCAATCTTTGGAAC 1525216 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| | || || | || || || | |||||||||||| || || ||||| Sbjct 1525217 ACCTCTTGGTGCTGGAGCAATTCCAGTTAACTCAAATGTTCCCAGCAAGTTGTTGTCTTT 1525276 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | | |||||| |||||||| | ||| || ||||| ||| ||||| || | | | Sbjct 1525277 GGTCATTGCTCGTTCGCCCTCGAATACTTGAATTGTAACAGCAGGCTGATTGTCAGCAAA 1525336 Query 281605 AGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 |||||||| | | || | | ||||||||||| | || | ||||| || ||| Sbjct 1525337 TGTTGTAAA--CGTTTGAGTCTGCTTACAAGGAATGCGAGCATTGCGTTCAATGATGTTG 1525394 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||||| |||||||| ||||| | || | |||||| ||||||||||| || | | | Sbjct 1525395 GTCATAACCCCACCAGCAGTTTCAATGCCCAAAGAAAGTGGAGTGACATCCACCAAAAGA 1525454 Query 281723 ATATTTTGAAGTTTTTCATCAGT------TTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 | || || | | | || || || ||| ||||| ||||| | || Sbjct 1525455 ACATCCTGCAATGCAGCGCTCGTGCTTCCTTCCCCGGTAAGGATAGCAGCTTGGACGGCG 1525514 Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 || ||||| |||||||| || |||||||||| | ||| |||| || ||| ||| Sbjct 1525515 GCGCCATAAGCAACAGCCTCGTCAGGATTAATCGAAAGATTCAGTTGCTTTCCACAGAAG 1525574 Query 281837 AAATTT-GAAAGA-AGT-TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 |||||| | |||| || || || || ||||| |||| || |||||||| | ||| Sbjct 1525575 AAATTTTGCAAGAGAGACTGGATT---TTGGGAATTCGAGTGGAACCTCCAACCAGTACG 1525631 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | | |||||||| || | ||| ||| | || ||||| |||||| Sbjct 1525632 ATATCATGAATGGATTTTTTATCCAACTTGGCATCGGTTAATGCCTTCTCAACTGGTTCA 1525691 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 ||| || | || | || | ||| | || || ||| | ||||| | | | | Sbjct 1525692 AGAGTAGAGCGGAAAAGATCGGCACATAACTCCTCAAATCTGGCTCTGGAGATTTTAGTA 1525751 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAA-CTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 | | |||| || || ||| |||||| || | || |||| | | | ||| ||||| Sbjct 1525752 TAAAAATCGATACCCTCGTACAAAGCGTCGATCTCCAATGAT-GCCTCAGTACTGGAAGA 1525810 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCT-GTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 282131 | | ||||| ||||||||| ||| || |||| ||| || | ||| || |||| Sbjct 1525811 CAACGTGCGTTTTGCACGTTCAGC-GCTAGTTCTTAATCTGCGAATCGCTCGTG--GATT 1525867 Query 282132 GATTCA-AATCTGTT-TTATATTTTCTCTTGAAAT---CTTCAACACACCATGTT--ACA 282184 | ||| || | || || ||||| || || |||| ||| || | ||| | || Sbjct 1525868 GGTTCTCAAGTTCTTCTTGTATTTCCT-TTCAAATTCTCTTGAAAA----ATGCTCTACC 1525922 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 | || || ||||| || || || ||||| | ||||| ||| | |||| | | |||| Sbjct 1525923 AATCGGTTGTCAAAGTCCTCTCCACCCAAATGAGTATCTCCAGCAGTAGATTTCACTTCA 1525982 Query 282245 AAAAGT---CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 |||||| || || || | || | || || ||||||| || || ||||||| |||| Sbjct 1525983 AAAAGTGAACCTTCGTCTATCGATAGAATAGAAACATCAAAAGTGCCTCCACCCAAATCA 1526042 Query 282302 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 282361 ||||| | || || ||||| | ||||||||||| ||||| |||| ||||||| Sbjct 1526043 AAAATCAAGACGTTTCTTTCTCCTTTCAAATTTTTATCAAGTCCATAGGCAAGAGCAGCA 1526102 Query 282362 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 282421 || ||||| || |||||||| || | || |||||||||||||| | || ||||| ||| Sbjct 1526103 GCGGTTGGCTCGTTAATAATCCTAAGGACGTTAAGACCAGCAATAGTACCAGCATCCTTA 1526162 Query 282422 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || ||||||| || ||||| ||||| || || ||||| ||||| || || || || ||| Sbjct 1526163 GTAGCTTGTCGCTGGGAATCATTAAAGTAAGCCGGAACTGTAATCACAGCTTCGGTGACT 1526222 Query 282482 TCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 | || || | || || || | | | |||| || | || ||| || || Sbjct 1526223 TTCTTCCCCAGGTAGGCTTCAGCGATCTCTCTCATCTTTGACAGAACCATGGAACTGATC 1526282 Query 282542 TGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 282601 | || ||| ||| |||| |||| | | | ||| || | | |||||| Sbjct 1526283 TCCTCGGGATTGAATTTCTTGATTTCACCTCGGAACTCTACCTCTATCTTTGGTTTCCCT 1526342 Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661 ||| | || | || ||||| ||||| | || ||||| ||||| ||||||||| Sbjct 1526343 CCATCGTTCACTACCTTAAAAGGCCAGTGCTTTATATCGTCTTGAATCTTTTGGTCATCG 1526402 Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 || ||| || || || ||||| ||||| || | |||||| | || || | ||| || Sbjct 1526403 TAACGTCTTCCGATCAAACGTTTAGCATCGAAGACAGTATTTGCAGGGTTCATAGCAACT 1526462 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 || | ||| || |||||||| || || |||| || || ||||||| ||||| || Sbjct 1526463 TGGTTTTTCGCAGCATCTCCGATGAGGCGTTCGGTGTCGGTAAATGCCACATAACTCGGG 1526522 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || || | ||| |||||||| || ||||| ||||| || ||||| | ||||| || || Sbjct 1526523 GTGGTTCTATTCCCTTGATCGTTAGCAATTATTTCCACCTTACCTTGCTGCCAAACTCCA 1526582 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || ||| | | || ||||| ||||| || || | ||| Sbjct 1526583 ACGCAAGAATACGTCGTTCCCAAATCTATTCCCACAGC 1526620 >seq88 Length=2672896 Score = 107 bits (118), Expect = 1e-17 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 637140 TCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGTGAATC 637199 |||||||||||| || || ||||| |||| || ||||| || |||||||| || || Sbjct 1649890 TCCAAATATTGCCAAGGAGATGCACGTTGGGCACTTAAGGTCCACTATTATCGGGGATAG 1649949 Query 637200 TATTTGTAGGGTATTAGAA-ATGTGTGGACACGATGTTTATCGTATTAATCATGTGGGTG 637258 |||||||||| | |||||| || || || || |||||| | | |||||||| || | Sbjct 1649950 TATTTGTAGGTTGTTAGAATATTTG-GGCCATGATGTTATGAGGCTGAATCATGTAGGCG 1650008 Query 637259 ATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 ||||||| |||||||| || ||| | ||||| Sbjct 1650009 ATTGGGGCACTCAATTTGGAATGCTCATTGC 1650039 >seq71 Length=681105 Score = 107 bits (118), Expect = 1e-17 Identities = 259/389 (67%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || || | || || ||||||||||| | ||||| ||||| || || | || | Sbjct 356924 GGCCGTTACGTGGAGTATCCCATTGGCATCGATGTCAAAGGTGACGTCGATCTTGGGAAT 356865 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | | ||||| | || || || | ||| ||||||| || ||||| || Sbjct 356864 GCCACGTGGTGCAGGAGCAATTCCACTCAGTTCGAATCTTCCCAGCAAGTTGTTATCCTT 356805 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || || |||||| | | || || |||||| ||| ||| ||||| || || Sbjct 356804 GGTCATCGCTCTCTCTCCCTCGTACACCTGAATGGTAACTCCAGGTTGGTTATCGGAGTA 356745 Query 281605 AGTTGTAAATACTCTG-GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 ||| || || |||| || | ||| || || || || || | || || || |||| Sbjct 356744 AGTGGTGAA-CGTCTGCGACTGTTTGCACGGGATACGTGCATTGCGTTCGATGATGTTGG 356686 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||||| |||||||| ||||| | ||||| || ||||||| || || || || | || Sbjct 356685 TCATAACGCCACCAGCAGTTTCGATGCCAAGGGAGAGAGGAGCAACGTCCACCAGCAGAA 356626 Query 281724 TATTTTGA-------AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCA 281776 || ||| || | || || || | || | |||||| || || |||| ||| Sbjct 356625 CATCCTGAAGAGCGGAGCTCTTGTTCCCTTCGCCCGA-AAGAATCGCAGCCTGAACAGCT 356567 Query 281777 GCACCATATGCAACAGCTTCATCAGGATT 281805 || || || ||||| ||||| ||||| || Sbjct 356566 GCTCCGTACGCAACCGCTTCGTCAGGGTT 356538 >seq4 Length=4731202 Score = 107 bits (118), Expect = 1e-17 Identities = 164/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||||||||| ||||| | | ||| | ||| || || |||| ||| | |||| Sbjct 3486988 TCAAAATCTTCTCCTCCAAGGTGAGTGTCTCCATTTGTGGCAACAACTTCGAATACTCCA 3486929 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | || | || | | | | || ||| || ||||| |||| |||||| | || || Sbjct 3486928 TTGTCGATAGTGAGCAAACTGACGTCAAAAGTACCACCTCCCAAATCAAAGACGAGGACG 3486869 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 ||| ||||| |||| | ||||| |||||||| |||| ||| || |||||||||||| Sbjct 3486868 TTCTTTTCTCCATCTT---TCTTATCCAGACCATAGGCAATAGCTGCTGCAGTTGGTTCA 3486812 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || || ||||||| || || || |||| ||| | || |||||||| || || Sbjct 3486811 TTGATGATTCTCATGACGTTCAGTCCAGAGATTGTACCAGCATCTTTGGTTGC 3486759 >seq113 Length=2554746 Score = 98.7 bits (108), Expect = 7e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | || || || | ||||| || || || || || |||| || | |||||| Sbjct 1884692 TTTATCCAAGCCGTATGCCAGCGCAGCTGCCGTCGGCTCGTTGATAACTCGAAGAACATT 1884751 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||||||||||| ||| ||||| ||||| |||||||| || ||||| || || ||||| Sbjct 1884752 TAGACCAGCAATCTGTCCAGCATCCTTAGTTGCTTGTCTCTGAGAATCATTGAAGTATGC 1884811 Query 282454 AGGAACAGTAATAACGGCATCTGTTAC--TTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 ||| ||||| | || |||| |||| | ||| ||||| || ||||| | | Sbjct 1884812 AGGTACAGTTACGACTGCATTCTTTACCGAAGTATTCAAATAT--GCCTCGGCTGTCTCT 1884869 Query 282512 TTCATTTTACTTAAAAT 282528 |||||||| | ||||| Sbjct 1884870 TTCATTTTCATCAAAAT 1884886 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 86116 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 86175 || |||||||| || || ||||| || || || || || | | |||||||| || ||| Sbjct 1884699 AAGCCGTATGCCAGCGCAGCTGCCGTCGGCTCGTTGATAACTCGAAGAACATTTAGACCA 1884758 Query 86176 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 86235 ||||| | ||| ||| ||||||||||||||| | ||||| || ||||| |||||| Sbjct 1884759 GCAATCTGTCCAGCATCCTTAGTTGCTTGTCTCTGAGAATCATTGAAGTATGCAGGTACA 1884818 Query 86236 GTAATAACTGCTTTATT 86252 || | ||||| || || Sbjct 1884819 GTTACGACTGCATTCTT 1884835 >seq55 Length=4851298 Score = 91.5 bits (100), Expect = 1e-12 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 432280 GATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGT 432339 |||||| || |||||||||||||| |||| || | ||||| ||||| || ||| | | Sbjct 1198010 GATTGAAGGGAAAAGAAGGTCGTATACGAGGGAACCTTATGGGTAAGCGAGTGGATTTTT 1197951 Query 432340 CTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 | || ||||| || ||||| | ||||||||| | || || ||||||| || |||| Sbjct 1197950 CAGCTCGTACGGTCATTACGCCAGATCCTAATCTACGCATCGATCAAGTTGGCGTGCCTC 1197891 Query 432400 TCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 432454 | || || ||||| | |||||| ||||| || ||| | |||||||| Sbjct 1197890 GTAGCATCGCACAAAATTTGACTTTTCCTGAAATCGTGACACCATTCAATATTGA 1197836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740584446355536