Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq116 183 6e-41 seq20 114 3e-20 seq25 93.3 8e-14 seq23 93.3 8e-14 >seq116 Length=4125705 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| ||||| |||||||||||||| || || |||||||||||||| || | | ||| Sbjct 2790313 CGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCA 2790254 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||||| ||| || ||||| ||||| | ||| || || || || || ||||||||||| Sbjct 2790253 TCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTG 2790194 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| ||||| || || ||||| ||||| | ||| || |||||||| || Sbjct 2790193 TCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATG 2790134 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| | ||||| ||||| ||||||||| Sbjct 2790133 GTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || || || || || || || ||||| || ||| Sbjct 2789869 CCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGAT 2789810 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || ||||| || || || |||||||| ||||| || || ||||| || Sbjct 2789809 AAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2789750 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| || |||||||| || ||||| || || || ||| Sbjct 2789749 ATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACT 2789690 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| || | ||||| ||||| ||||||||| Sbjct 2789689 TCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || |||||||| || || || ||||| || || || |||||||||| | | ||| ||| Sbjct 2790082 AGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCT 2790023 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 |||| || || || || ||||| | |||||||||||||| || |||||||| || || Sbjct 2790022 TCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCC 2789963 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| || || || |||||||| || || | || || ||||| || || ||| Sbjct 2789962 TGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTC 2789903 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| | ||||| ||||| ||||||||| Sbjct 2789902 TTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | || ||||| || || || | || |||||||| || || || || | Sbjct 2790783 TACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTG 2790724 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||| || || | |||||||||||| ||||||| || || || ||||| | Sbjct 2790723 AAAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCG 2790664 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| ||||| || ||||| || ||||| || || || | ||| | Sbjct 2790663 GGATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCA 2790604 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| |||||||||||||| || | || || ||||| |||||||| Sbjct 2790603 CCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 |||||||| || || ||||| ||||| || || || || | | || ||||| ||||| Sbjct 2790529 TGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGC 2790470 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||||| ||| || ||||| ||||| || ||||| ||||| |||||||| Sbjct 2790469 TTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGAATCTTA 2790410 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | ||| || ||||||||||| || | || ||||| || || || || ||||| || Sbjct 2790409 GTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAGTG 2790350 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||| || || || |||||||| Sbjct 2790349 AGCGTTTTAACGAAGATCTGCAT 2790327 Score = 143 bits (158), Expect = 5e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82592 CAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCT 82651 || |||||| || | ||| || || || || ||||| || || ||||| || | | | | Sbjct 2789422 CAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACG 2789363 Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||||| || ||||| || || || ||||| | || || ||||| || || ||||| || Sbjct 2789362 TCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTC 2789303 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||||||||||||||| | |||||||||||||| || || || || || || | || Sbjct 2789302 CTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGT 2789243 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| ||||| ||||| |||||||| Sbjct 2789242 AATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCAT 2789204 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || |||||| || | ||| || || || || ||||| || || || || || Sbjct 2789641 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2789582 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || ||||| || || || |||||||| ||||| || |||||||| || Sbjct 2789581 AGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGA 2789522 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || ||||||||||| || || || || || ||||| || || ||| Sbjct 2789521 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACT 2789462 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC 82798 |||| || || |||||||| || | ||||| || Sbjct 2789461 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAAC 2789427 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || ||||| || || || || || ||||| || || ||||| |||| | | || Sbjct 2790997 CGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCA 2790938 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || |||||||| ||||| ||||| |||| ||||| || || || |||||||||||| Sbjct 2790937 TCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTA 2790878 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| || | ||||| || || ||||| || | || ||||||| ||| || Sbjct 2790877 TCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATG 2790818 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| || || |||||||| Sbjct 2790817 GTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 >seq20 Length=2461668 Score = 114 bits (126), Expect = 3e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || ||||| ||||| || | || || ||||| | || |||||||| |||| Sbjct 1189127 CTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGA 1189068 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | || ||||| ||||| || || ||||| || || ||||| ||||| || || | Sbjct 1189067 TGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCT 1189008 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || ||||| | || || || | || || ||||||||||| | ||||| || | Sbjct 1189007 CGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGA 1188948 Query 82801 ATATCTGCATTAT 82813 | |||||||| || Sbjct 1188947 AGATCTGCATGAT 1188935 >seq25 Length=4911174 Score = 93.3 bits (102), Expect = 8e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 |||| ||||||||||| ||||| ||| | ||||||| || |||||| |||||| | ||| Sbjct 4899143 TAGGCTGTATGTGGTCAATTTGTGGAATTCATGATCAAGGGTGGAAGGAAAGAAATGTAT 4899084 Query 198574 TTGGGAAGATAAGATATATGAATTAT 198599 |||| || ||||| |||||||||||| Sbjct 4899083 TTGGAAAAATAAGGTATATGAATTAT 4899058 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 198340 TATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAA 198399 |||||||| | | |||| ||| |||| | ||||| |||||| | |||||||||| Sbjct 4899405 TATGGAATTCTGCTCAAAATCAGTTGATGTGTATGGGAAAGATGCATGGATTTTTAAGAA 4899346 Query 198400 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCT-TTGAGTTAT 198458 |||||||| |||| || ||| | |||||||| | ||||| || | ||| |||| | | Sbjct 4899345 TGTACTGGTCTAAGAAAATATTGGAATGGACTCGTACACCTGAGCAAGCTCTTGAATGGT 4899286 Query 198459 AGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 198518 ||| ||| |||| | |||||| |||| || ||||| || |||||||| ||| Sbjct 4899285 -CTATTTATTTAAATGACAAGTACAGTATAGATGGATGCGATCCAAATGGATACGTTGGT 4899227 Query 198519 T 198519 | Sbjct 4899226 T 4899226 >seq23 Length=3064571 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || || |||||||||||||||||||| |||||||| || |||||| | ||| || || Sbjct 1521584 CCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCGATGGTATCAGAGGCTTCAACCTCA 1521643 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || || ||||||||||| |||||||| Sbjct 1521644 AGGGTAATGGTCTTCCCCGTTAAAGTCTTTACAAAAATCTGCAT 1521687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981815425437304