Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq90 120 4e-22 >seq90 Length=5345918 Score = 120 bits (132), Expect = 4e-22 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 140508 AATTTTTGTTTAGGAAAACACCTTTCAAGTGAAAACGATCTTTTAAAAGATCAACGCGGG 140567 || |||| || || || || | || |||||||| ||| | || ||||| ||||| || Sbjct 3142851 AACTTTTTCTTGGGCAAGCATTTGTCCAGTGAAAATGATTTATTGAAAGACCAACGGGGA 3142792 Query 140568 TCTCCCGCATATATTTCTCCGGATGT--TATCAGCGGTAAACCATATTTAGGTAAACCGT 140625 || || ||||| ||||| || || || |||| ||||||||| || ||||| ||||| | Sbjct 3142791 TCCCCAGCATACATTTCCCCAGAGGTCCTATC--CGGTAAACCTTACTTAGGGAAACCAT 3142734 Query 140626 CTGATATGTGGGCGCTTGGAGTAACATTGTATACCATGTTGTTTGGGCAATTTCCATTTT 140685 | ||||||||||| | || || || | || ||| ||| ||| |||||||| |||| Sbjct 3142733 CAGATATGTGGGCTTTAGGTGTTGTTTTATTTATTATGCTGTATGGTCAATTTCCTTTTT 3142674 Query 140686 ATGAT-GCGTCTCCAACAGAGCTCTTTAGAAAAATAAA 140722 ||||| || | ||||| || | |||| |||||||| Sbjct 3142673 ATGATAGCAGC-CCAACGCAGTTGTTTAATAAAATAAA 3142637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704574156385920