Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq116 131 2e-25 >seq116 Length=4125705 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 148239 AGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA 148298 ||||| | | ||||| | || || | ||||||||| |||| ||| || || || | Sbjct 2591373 AGGTCTTTCAACAGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTA 2591432 Query 148299 TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTT 148358 || | ||| || || ||||||||| || |||||||| ||||||||||| || || | | Sbjct 2591433 TAGATGTTACTGGTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGAT 2591492 Query 148359 GCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGC 148418 ||||| ||||| || | |||| || ||||| | |||| | ||| |||||| Sbjct 2591493 GCCGTAGGCATTGGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCT 2591552 Query 148419 TTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGA 148478 |||||||| ||||||| ||| || | ||| || ||| |||||| |||||||||| | Sbjct 2591553 TTCAGAGCTGCCCAGTTCCAAAGATTAGTCGGCGTTACGCCCCACATATCGTACTGCAAA 2591612 Query 148479 AT 148480 || Sbjct 2591613 AT 2591614 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| || | ||||| | ||||||||| || ||||| ||||||||| Sbjct 2789797 TCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTG 2789738 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | |||||||| | ||| || || | ||||| | Sbjct 2789737 TCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATG 2789678 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || ||||| || || ||||||||||| Sbjct 2789677 GTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 100 bits (110), Expect = 3e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||||||| || || ||| |||||| || |||||| Sbjct 2789401 GGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGT--ACGTCCGTCCTCCAGTTGCTTG 2789344 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | || | || |||||| ||||| || || || ||||| || ||||| | Sbjct 2789343 CCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCACC 2789284 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| ||||||| | ||| || |||| ||| | ||| || || |||| Sbjct 2789283 TTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTCCCAGTCAAT 2789224 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || |||||||||||| Sbjct 2789223 GTCTTGACAAAAATCTGCATG 2789203 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| |||||||||| Sbjct 2789612 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCTAGCTGCTTGC 2789554 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| | |||||| || || || || || |||||||| |||||| || Sbjct 2789553 CGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCCTCCTTGTCCTGAATCTTTGCCT 2789494 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | || |||| | ||| || || | ||||| ||| |||||||| || | Sbjct 2789493 TCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGGGTGATGGTCTTGCCGGTAAGGG 2789434 Query 133642 TTTTTACGA 133650 | || |||| Sbjct 2789433 TCTTAACGA 2789425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || || || ||||| ||||| || |||| ||| | || || | Sbjct 2790304 AAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCA-TCTTCTAA 2790246 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || | | |||||||||||| ||||| ||||||||||| ||| Sbjct 2790245 TTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGGAT 2790186 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 | || |||| | | | ||||| || |||| | || || || | |||| ||| || | Sbjct 2790185 C-TTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATGGTCTTAC 2790127 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || || || |||||||| Sbjct 2790126 CTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 133467 GACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGC 133525 ||||||||||| || ||||| || | ||| ||| | ||||| | || || || || Sbjct 2790748 GACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCA-TCCTCCAATTGTTTTCCAGC 2790690 Query 133526 GTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAG 133585 | | || | || ||||||||| || ||||| |||||||| || ||| ||| |||| | Sbjct 2790689 GAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCC-TGAATTTTGGCTTTAA 2790631 Query 133586 C-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTT 133644 | | || | ||||| | | ||||| || | ||| | || ||||| || || |||| Sbjct 2790630 CGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTT 2790571 Query 133645 TTACGAAAATCTGCAT 133660 | || ||||||||||| Sbjct 2790570 TGACAAAAATCTGCAT 2790555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415143976640