Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 3e-13 seq55 89.7 1e-12 >seq3 Length=3390926 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/184 (73%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 304889 CAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC--AG-GCATCT 304945 |||| ||| |||||||||| || || ||||||||||| ||||| || || || | Sbjct 1104654 CAATTTCACGTTGCAACATTGATAGACAATGAAATTGCAGGAAT---GCCAAGAGCGTTA 1104598 Query 304946 CAAAGATCTGGCA-GACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCG 305004 || | ||| || | | |||| ||| |||||| | | ||||| || |||||||| Sbjct 1104597 CATAAATCAGGGAAGCCCTTGAAATCCCTGAAGGCAAGAC-TGAAAGGCAAGGAGGGTCG 1104539 Query 305005 TATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACC 305064 |||||||| || || ||||| || |||||||||||| |||| | | ||||| ||||| Sbjct 1104538 CATTCGAGGAAACCTCATGGGGAAGCGTGTTGATTTTTCTGCACGCACAGTAATTACACC 1104479 Query 305065 TGAT 305068 ||| Sbjct 1104478 AGAT 1104475 >seq55 Length=4851298 Score = 89.7 bits (98), Expect = 1e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||| | ||||| || | || ||| |||| || |||||||| |||| ||||||| | Sbjct 2591817 TTTAATCGACAACCCTCCTTACACAAATTGTCAATCATGGCTCACAAAGCCAAAGTACT- 2591875 Query 305396 TCTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGA 305454 | | || |||| | || || | | ||| ||| || || || ||||| |||||||| Sbjct 2591876 TGAACACAGAACATTCAGGTTTAACGAATGTGTTTGCACACCATACAATGCAGATTTTGA 2591935 Query 305455 TGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||| ||||||||||| ||||| |||| ||||| Sbjct 2591936 TGGGGATGAAATGAACCTGCATTTACCACAATC 2591968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186798567147496