Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq116 105 4e-18 >seq116 Length=4125705 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || | |||||| || |||||||| || || || || || | || ||| Sbjct 2790763 ACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCC 2790704 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||||||||| || || || || | |||||| ||| |||| | ||||| || || | Sbjct 2790703 AATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGA 2790644 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | || ||| | || | |||||| || |||||| || | || ||||| || Sbjct 2790643 ATTTT-GGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTT 2790585 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| ||||| |||||||| Sbjct 2790584 GCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||||||||| ||||||||||| || | |||||| | || || || || || ||||| || Sbjct 2790062 CTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAA 2790003 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| | || |||||| | || | ||||||||||| ||| || | | ||| | Sbjct 2790002 GATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGAATCTT-GGCCTTAACGT 2789944 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| || ||||| || | || || || || ||||| | || || | Sbjct 2789943 TTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAA 2789884 Query 33737 CAAAGATCTGCAT 33749 ||||||||||||| Sbjct 2789883 CAAAGATCTGCAT 2789871 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| |||||| ||| || || || ||||| |||||||| || || | || || | ||| Sbjct 2790530 ATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTG 2790471 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || ||||| || || | ||||||||| | || | |||||||| || ||| || Sbjct 2790470 CTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGAATCTT 2790411 Query 33666 CTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724 |||| || | ||| |||||| | ||||| || | ||||| ||||| || | Sbjct 2790410 A-GTTTTGACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAG 2790352 Query 33725 TTAACGTTTTTACAAAGATCTGCAT 33749 | | |||||| || ||||||||||| Sbjct 2790351 TGAGCGTTTTAACGAAGATCTGCAT 2790327 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||| ||||| || ||||| || || ||||| || || ||||| | || || Sbjct 2790307 ACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGACCATCTTCT 2790248 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| || || || || ||||| | |||||| || | || | ||||| ||||| Sbjct 2790247 AATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGG 2790188 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || ||| ||| | ||| ||| ||| || ||| || || | ||||| || || Sbjct 2790187 ATCTTAGCTTT-AACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTGATGGTCTT 2790129 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| | || || |||||||||||||| Sbjct 2790128 ACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700250309120