Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq116 125 2e-23 >seq116 Length=4125705 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || || || ||||| ||||| || ||| Sbjct 2789874 CAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATCCGAC 2789933 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| || ||| |||||||| || |||||||||||| || || ||| Sbjct 2789934 ACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAACAA 2789993 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||| |||||||| |||||||| | || || | ||||||||| | Sbjct 2789994 AGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAACATT 2790053 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| || |||||| | || | || |||||| Sbjct 2790054 CAAAAAGAGTCAACGCTTCACTTAGTCCTCAGGCTTCGA 2790092 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| |||||| ||||||| || || ||||| |||| Sbjct 2790798 AAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCGGACACGATCGAGAAC 2790857 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| || ||||||||| |||||| || |||| |||||| Sbjct 2790858 GTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAACAGCGACTCATCTTC 2790917 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || | || |||||| | || || ||||||||||| ||||||| ||||| Sbjct 2790918 GCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAACATCCAGAAGGAGTCC 2790977 Query 206365 ACTCTTCA 206372 || || || Sbjct 2790978 ACCCTACA 2790985 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || || || | || || || ||| ||| Sbjct 2789207 CAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTCCGAC 2789266 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| ||||||||||| || || |||||| || || || Sbjct 2789267 ACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAGCAG 2789326 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||||||||| ||||| |||| || ||| | |||||| ||||||||||| || Sbjct 2789327 AGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAACATC 2789386 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || |||||||| || Sbjct 2789387 CAGAAGGAGTCGACCCTTCACCTGGT 2789412 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || || || ||||| || ||||| |||||| || ||| Sbjct 2790558 CAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCGGAC 2790617 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| ||||| || || ||||| || ||| ||| || Sbjct 2790618 ACCATCGAAAACGTTAAAGCCAAA-ATTCAGGATAAGGAAGGGATCCCGCCAGACCAGCA 2790676 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | |||||||| ||||| || ||||| ||||| | || | | || |||||| | Sbjct 2790677 GAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACAACAT 2790736 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| | ||||| | ||| | ||||||| Sbjct 2790737 TCAGAAAGAGTCAATGCTTCATTTGGTTCTTCGACTTCG 2790775 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||||||||| || ||||| ||||| || |||||||| || ||||| | ||| Sbjct 2790342 AAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCCGACACGATTGAAAAC 2790401 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||||||| || |||||||| ||| ||||| || ||| | ||||| Sbjct 2790402 GTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAGCAGAGATTAATCTTT 2790461 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| | |||||||| | || | |||| ||||| | ||||| ||||| Sbjct 2790462 GCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAATATTCAGAAGGAGTCC 2790521 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || | ||||||| Sbjct 2790522 ACTCTGCATCTCGTCCTTCGACTTCG 2790547 Score = 91.5 bits (100), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || ||||||||||| || ||| || || Sbjct 2790102 CAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATCCGAT 2790161 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || | | |||||| ||||| || || || |||||||| || ||| || Sbjct 2790162 ACCATTGAGAACGTTAAAGC-TAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAGCA 2790220 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | |||||||| || ||||| || |||||||| | || || | ||||| || | Sbjct 2790221 GAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAATAT 2790280 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || |||||||| || | || || ||||||| Sbjct 2790281 TCAAAAGGAATCTACTCTGCATTTAGTCCTGCGACTTCG 2790319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181806627014056