Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq116 100 3e-16 >seq116 Length=4125705 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 7/234 (3%) Strand=Plus/Plus Query 136972 AGATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGAT--TAC 137029 ||||| | ||||| | ||| | || || || || |||| || ||| |||| ||| Sbjct 2591385 AGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGG--GTATAGATGTTAC 2591442 Query 137030 TAGTGAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCA 137089 | ||| |||| || | ||||||||||| |||||||||||||| || | || || |||| Sbjct 2591443 TGGTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCA 2591502 Query 137090 TGTAAGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTT 137149 | ||||| | ||| ||||| || | ||||||| || | || || || || || Sbjct 2591503 TTGGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTG 2591562 Query 137150 TCCAGTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAA 137203 ||||||||| ||||| ||| | |||| ||||| ||| ||||||||| Sbjct 2591563 CCCAGTTCCAAAGATTAGTCG---GCGTTACGCCCCACATATCGTACTGCAAAA 2591613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| ||| | ||||| | |||||||| || Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | ||||| |||||| ||||| || || || || || || || Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||||| | || || ||||||||||| |||| | | | ||||||||| Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAAC 2790962 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || || || |||||| | |||||||| Sbjct 2790963 ATCCAGAAGGAGTCCACCCTACATTTAGT 2790991 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 |||||||| | ||||| || ||||| || || || | || || |||| ||||| || Sbjct 2789201 AACATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCT 2789260 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||| ||||| || | ||||| || ||| ||||| ||||| || || |||||| Sbjct 2789261 TCCGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGAT 2789320 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| || | || | || |||||| ||||| || || | | | | | ||||||| Sbjct 2789321 CAGCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTAC 2789380 Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377 || || || || || || ||| |||| Sbjct 2789381 AACATCCAGAAGGAGTCGACCCTTCA 2789406 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || || || | ||||| | || |||||||| | Sbjct 2790099 ATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATCC 2790158 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || ||| || || || || || || || || ||||| ||| Sbjct 2790159 GATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAG 2790218 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | || ||||| ||| | ||||||| | | | |||| | |||| | Sbjct 2790219 CAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTG--ATTATA 2790276 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||| ||||| || | |||||||| Sbjct 2790277 ATATTCAAAAGGAATCTACTCTGCATTTAGT 2790307 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | || || ||| | ||||| | ||||| || || Sbjct 2790326 CATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTC 2790385 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | || ||| || ||| |||||||| || || || || ||||| Sbjct 2790386 CGACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCA 2790445 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | ||||| ||||||||||||| | | || ||| ||||| Sbjct 2790446 GCAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAA 2790505 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||| || || ||||| Sbjct 2790506 TATTCAGAAGGAGTCCAC 2790523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445089192395520