Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq116 104 2e-17 seq23 95.1 1e-14 >seq116 Length=4125705 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| ||| || || |||| ||||| ||||| || || || Sbjct 2789395 CTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAA 2789336 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||| || | |||| | |||||| || ||||| ||| | | | Sbjct 2789335 GATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCACCTTTACATT 2789276 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| | || ||||| | || || || || || ||||| || || || Sbjct 2789275 TTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTCCCAGTCAATGTCTTGAC 2789216 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2789215 AAAAATCTGCAT 2789204 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || || ||||| | ||| ||||||||||| || ||||| | | Sbjct 2790325 CCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGAC 2790266 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || | ||||| || || || ||||| | ||||||||| | || Sbjct 2790265 AGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGG 2790206 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| |||| || |||| | ||| | | || ||| | ||| || Sbjct 2790205 ATTCCTTCCTTGTCCTGGATC-TTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGAC 2790147 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| ||||| || ||||| || | ||| || ||||| |||||||||| Sbjct 2790146 CTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATTC 2790097 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | ||| | || || || | ||| ||| ||||||||||||||||| | Sbjct 2790099 TTCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAG 2790040 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || || | |||||| || || || ||||||| || || || | | Sbjct 2790039 ATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGG 2789980 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || |||||| ||||| ||| | || | | |||||| | |||| Sbjct 2789979 GAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCA 2789920 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||||| || || || || || || | || || ||||| |||||||||| Sbjct 2789919 CCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATTC 2789869 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | | | ||| || ||||||||||| || | | ||||| | || ||| Sbjct 2790763 ACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCC 2790704 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | || || || || || || |||| ||||||||| | || | | ||||| ||| || Sbjct 2790703 AATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCC-TG 2790645 Query 35648 ATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| |||| | ||| | | ||||| | ||||||||||| || ||||| || Sbjct 2790644 AATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTT 2790585 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| ||||| |||||||| Sbjct 2790584 GCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 >seq23 Length=3064571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| | | |||||| ||||| |||||||| ||||||||| || |||||||| | Sbjct 1521381 TCCACCTCTCAGCCTCAATACCAAGTGTAACGTTGACTCCTTTTGGATATTGTAATCCGA 1521440 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| |||| | || || ||||||||||| ||||| || |||| |||||| || | || Sbjct 1521441 CAAAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAAATTAACCTCTGCTGATCAGGTGG 1521500 Query 35629 AACGC 35633 || || Sbjct 1521501 AATGC 1521505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450788325714880