Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq116 187 3e-42 seq38 93.3 6e-14 >seq116 Length=4125705 Score = 187 bits (206), Expect = 3e-42 Identities = 228/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || |||||||||||||| || || ||||| || | ||||| | |||||||||||| | | Sbjct 2592663 TTACCTGTATTTTTTTTGAGTTCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCAAA 2592722 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || |||| |||||| || || ||||| | || | ||||| ||| Sbjct 2592723 TACATTGCAAAAGCACCTGGTCTTTTATTACCACCTTGATCGACATAACGAGCAGTATTA 2592782 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| || | | ||| || | | ||||||||||| ||||| || || || || | Sbjct 2592783 TTATATACACGAATCATGGGTACCAAACCATTAGATTCTCCATTAGTGCCTGATATTCTA 2592842 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 ||||| | || | |||| | ||||| ||| || |||||||| || |||| ||| Sbjct 2592843 GTTCCTTTCGCTCTAATACAATTAATACTTAGTCCGATTCCTCCGGCTGATTTACTGATA 2592902 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 |||||||| | ||||||||| ||||| || ||||| |||||||| || |||| | || Sbjct 2592903 AGAGCACATCTTTTCAATGTATCATAAATGCCCTCGATGCTATCTTCGCTCATTGTCAGC 2592962 Query 69961 AGAAAACAGCT 69971 || |||||||| Sbjct 2592963 AGGAAACAGCT 2592973 Score = 154 bits (170), Expect = 2e-32 Identities = 228/319 (71%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 |||| || ||||| || | ||||| || ||||||||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 ||||||| | || || ||||| || || || || | || || || ||||| | || Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAACCTTTGCGACTTCTTTCAGTTTAACAA 2592083 Query 69236 AATCAAA-----TCGTCCATCTA-TAACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 | ||||| | || | | |||||||||| |||| |||| || |||| ||| | Sbjct 2592084 AGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAATTGC 2592143 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || ||||| |||| || | | | ||| | | || |||||||| ||||| || | || Sbjct 2592144 ATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGCTTT 2592203 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG-TTACAGGCGTCCTTGTAAAGAATA 69408 | || || || |||||||| ||||| | ||| | || ||| || || || || || Sbjct 2592204 TAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGATCTTTATACAGCATG 2592262 Query 69409 AACGGAGTACCAGTTTCAA 69427 ||||||| |||||||||| Sbjct 2592263 TACGGAGTTCCAGTTTCAA 2592281 Score = 109 bits (120), Expect = 8e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 70002 AAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAAT 70061 ||||| |||||| || || ||||| || | || || | | |||||||||||| || Sbjct 2593086 AAATAGTGTAGGTGAAGCATGAGTAAAGTAGCGCTCCGATAAGAAATTGTATGTTTCTAT 2593145 Query 70062 AGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 | | ||| |||||| | ||||||| | | || |||||||| | ||||||||| || Sbjct 2593146 AACCTTTTCAATATCCTCTTCATGAATTGCCACAGCTACACGCATTAGCATATGCTGTGG 2593205 Query 70122 TCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCC 70181 || ||| || ||| ||| || || | ||||| | | || || |||||||| || Sbjct 2593206 TCTTTCAACGACTTTGCGATTAATCTTTAGTAGGTAACTTCTCTCAAGGGTTTTAAAACC 2593265 Query 70182 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 ||| || || || ||| ||||| || |||||||| ||||||| Sbjct 2593266 AAAGTAATTATAACTAAAATCTCTATCATAAATAATTGCAGAATT 2593310 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558 || ||||| || || ||| |||| | |||||||||||||| ||||||||||| || Sbjct 2592419 TACTGTGTGTACAGTTCTTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCG 2592478 Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618 | |||||||| || ||||| |||| || |||||||||||||| ||||| ||| Sbjct 2592479 TGAGGACACATTAAAGACCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGA 2592538 Query 69619 ATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttt 69673 ||||| | || ||| | ||||| | | || || || || |||||| ||| Sbjct 2592539 ATCCACAAGGCATAAAACAATTCTCTTGCACGATGCTCCTCTTTGCCTGTAGTTT 2592593 >seq38 Length=2292016 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | ||| ||| ||| || || |||||||| || || | |||| Sbjct 219271 CCTCATCTCTAGAAATAAGTTCATTACTAAAGGTAAGGCCAGGCATGAGTCCTCTTTTTT 219212 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || || |||||| ||| |||||| || || ||||| || ||||| | Sbjct 219211 TCAACCAGAAAATAGCTGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCAGCAAAGG 219152 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | |||| | ||| || | | | |||| || ||||| || ||||||| | | Sbjct 219151 CCACAACACGCTCCCCAAATGTCGCGGATTCATGATTAATCCAATTTAGTGCCCAGTTTG 219092 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||||||| ||||| || | |||| || |||||||| Sbjct 219091 CTTTCTTAGCGACACATGGAAGGTTTTCAATGGCATTAAA 219052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900763167040