Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq38 100 2e-16 seq17 95.1 1e-14 seq88 82.4 6e-11 >seq38 Length=2292016 Score = 100 bits (110), Expect = 2e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| || || || |||||||||||| | || |||||| || Sbjct 218787 GCATTCTTTGCTGCTTCTGATGGTATCGTCAATGAAAATCTTGTAGAACGGTTTAGTCAG 218846 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| ||| | | ||||| ||||| |||||||| || ||| | || || |||||| || Sbjct 218847 GAAGTACAAGTTACGGAAGCTCGATGCTTTTATGGATTCCAAGTGGCTATGGAAAATGTT 218906 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 ||||| |||||||| ||| || ||||| || || |||| Sbjct 218907 CATTCTGAAATGTATTCTCTACTAATAGACACTTATATCA 218946 >seq17 Length=2940332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/272 (68%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 19258 AAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTC 19317 ||||||||| || || ||| | |||||||| | || | || ||| || | || || Sbjct 2356013 AAAGAGTTTAGTGCCATTTTTAGAAGAGCATTCGCATCCAGAGTGTTTCCTCCGGAGGTT 2356072 Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 | | ||||||||| || ||||| || || |||| | ||||| || || ||| Sbjct 2356073 GTCATACAATTGGGGTGCAAACACGTCAAAGGTATTTTATTGTATGGACCTCCAGGTACC 2356132 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAA 19434 || ||||| | || || ||| || || | | | | || | ||| | |||| |||| Sbjct 2356133 GGTAAAACTCTGATGGCTAGACAAATTGGAACAATGCTGAATGCAAGAGAACC---CAAA 2356189 Query 19435 ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGA 19494 |||||||| |||||| || | | ||||||||||||| || |||| || | || Sbjct 2356190 ATTGTAAACGGTCCTCAAGTTCTGGATAAATATGTAGGAGAAAGTGAAGCTAACATTAGA 2356249 Query 19495 CGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 | || || ||||| || ||||||||| |||| Sbjct 2356250 AGGTTATTCGCTGATGCCGAAGAAGAAGAAAA 2356281 >seq88 Length=2672896 Score = 82.4 bits (90), Expect = 6e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||| |||||||| ||||||| || ||| || ||||| || ||| | || ||| ||| Sbjct 1503001 GATGGCCTTGCCACCATGTCATT-GTCTTGTGCAATTTTATGTATGCGACGGAGAATTGT 1503059 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | || |||||| | ||||||||||| || || || || || || || Sbjct 1503060 CCTGCCAACTTTACCAAAGAAGCGCCGACATGGGACTTGGAGTACCATTCAATATCGCAT 1503119 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 |||| | || || || || ||| | || || ||||| Sbjct 1503120 CTTATTCACTACTTACATACATGTTGGCTCATGTTAC 1503156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451466020680