Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq116 96.9 3e-15 >seq116 Length=4125705 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 130732 AAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAAC 130791 ||| ||||| | || |||| || | ||| ||||| || || | ||||| |||| Sbjct 2591372 AAGGTCTTTCAACAGATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGT 2591431 Query 130792 GTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGT 130851 || ||||| || ||| ||||||||| |||||||||||| || || || |||||||||| Sbjct 2591432 ATAGATGTTACTGGTGTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGA 2591491 Query 130852 TGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTT 130909 ||| || ||||| || | | | |||||| |||| |||||| | | |||||| Sbjct 2591492 TGCCGTAGGCATTGGGGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTT 2591549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||||||| | | | || | |||||||| || || || Sbjct 2790523 GTGGACTCCTTCTGAATATTGTAGTCGGAGAGGGTACGGCCATCTTCGAGTTGCTTGCCA 2790464 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | | ||| |||||||| || | || |||||||| ||||| |||| Sbjct 2790463 GCAAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTCTTTATCCTGAATCTTAGTTTTG 2790404 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| | || || ||||||| || || | |||||| || || ||| Sbjct 2790403 ACGTTTTCAATCGTGTCGGACGCCTCCACTTCTAAGGTGATTGTTTTGCCAGTGAGCGTT 2790344 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 2790343 TTAACGAAGATCTGCAT 2790327 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/249 (69%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 |||| || ||||||| | | || ||| || || || || |||||||| |||||||||| Sbjct 2592664 TACCTGTATTTTTTTTGAGTTCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCAAAT 2592723 Query 131775 ACACTGCCATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGT 131831 ||| ||| | || || | | ||||| ||||||| |||| |||| | | || | Sbjct 2592724 ACATTGCAAAAGCACCTGGTCTTTTATTACCACCTTGATCGACATAACGAGCAGTATTAT 2592783 Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTG-CTCTTAATGTAG 131890 | ||||| || | |||||| ||||||| || | | |||||| ||| || || | ||| Sbjct 2592784 TATATACACGAATCATGGGTACCAAACCATTAGATTCTCCATTAGTGCCTGATATTCTAG 2592843 Query 131891 CTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATT 131950 | || || ||||| || | || | ||||| || |||||| | ||||| ||| Sbjct 2592844 -TTCCTTTCGCTCTAATACAATTAATACTTAGTCCGATTCCTCCGGCTGATTTACTGATA 2592902 Query 131951 AGTGCGCAT 131959 || || ||| Sbjct 2592903 AGAGCACAT 2592911 Score = 89.7 bits (98), Expect = 4e-13 Identities = 188/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 131208 TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGC 131267 |||||||| ||||| || || | ||||||| |||||| |||| | || ||| Sbjct 2592009 TGGGATAATAATTAATATCTATGACCTTGTTTAGATTGCGTGTAACAACCTTTGCGACTT 2592068 Query 131268 TTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTA-CAAATTGATTTACACAT 131326 ||||| ||| | || ||||| | | | | ||| ||| |||| || ||| | Sbjct 2592069 CTTTCAGTTTAACAAAGTCAAATTT-CTTGGTGGAAGGATTAACAAACATGTTCACAGCT 2592127 Query 131327 ATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCG 131386 || || || | ||| || || || ||| ||| | | |||||| ||| ||||| | Sbjct 2592128 ATGGAAGCTAAATTGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTA 2592187 Query 131387 CACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG 131446 || | ||| ||||| || || ||||| | |||||||||||| |||| ||| || Sbjct 2592188 CAGAGATTGCTGCTTTTAATTGTGCCTAGATTTTGTTGATTCGATTTACGATTGCAGTGA 2592247 Query 131447 TCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTG 131484 || || |||| |||||| || || || ||||| ||||| Sbjct 2592248 TCTTTATACAGCATGTACGGAGTTCCAGTTTCAACTTG 2592285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424929552560832