Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq116 168 8e-37 seq20 125 8e-24 >seq116 Length=4125705 Score = 168 bits (186), Expect = 8e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| |||||||||||||| || || || || || ||| | |||| ||| | Sbjct 2789427 GTTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCGAG 2789486 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || ||||||| || ||||||||||||||||||||||| ||||| |||||| | || || Sbjct 2789487 AACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTCATC 2789546 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| || ||||||| || || || | ||||| || |||| ||||| Sbjct 2789547 TTTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAG 2789606 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || || ||||| || ||| ||||||| ||||||||| Sbjct 2789607 TCGACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGA 2789642 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || ||||| || ||| | ||||| || || Sbjct 2790098 AATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATC 2790157 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| || | || ||||| || ||||||||||| ||||| || || ||||| Sbjct 2790158 CGATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 2790217 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || || ||||| |||||| | || |||| ||| || || | || ||||| Sbjct 2790218 GCAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAA 2790277 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||||||||| ||||| ||| ||||| |||| ||||| || || Sbjct 2790278 TATTCAAAAGGAATCTACTCTGCATTTAGTCCTGCGACTTCGTGGAGG 2790325 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || |||||||| || || || || || ||| | Sbjct 2789642 AATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTC 2789701 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | ||||| || || || |||||||| ||||| || |||||||| Sbjct 2789702 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 2789761 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || ||||||| ||||| || | |||||||| Sbjct 2789762 GCAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAA 2789821 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||| || || ||||| || ||| ||||||| || |||||| Sbjct 2789822 CATCCAAAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCGTGGTGGA 2789870 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || ||||| || ||||| || || || | || || ||| | Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || |||| |||||||| || || || |||||||| || ||| Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| |||||||| ||||||||||| |||| |||||||| | ||||| ||| Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| ||||| ||| | || ||||| ||||| Sbjct 2790507 ATTCAGAAGGAGTCCACTCTGCATCTCGTCCTTCGACTTCGTGGTGG 2790553 Score = 134 bits (148), Expect = 2e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| |||||||| ||||| | ||||| ||| || Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | ||||| || ||||||||||| || |||||||| ||||| || Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCA 2789989 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | | || || || || ||||| | || |||| ||| || || | || || || Sbjct 2789990 ACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAA 2790049 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || || || ||||| ||||| | | ||||| |||||| Sbjct 2790050 CATTCAAAAAGAGTCAACGCTTCACTTAGTCCTCAGGCTTCGAGGTGGA 2790098 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || || ||||| ||||| || ||||| ||| | Sbjct 2789204 ATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTCC 2789263 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | |||| || ||||| || |||||||||||||| || || ||| Sbjct 2789264 GACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAG 2789323 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || || || |||||||| ||||| | ||||| | | || || || Sbjct 2789324 CAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAAC 2789383 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 |||| ||||| || || ||||| || ||| ||||||| || Sbjct 2789384 ATCCAGAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCG 2789424 Score = 132 bits (146), Expect = 5e-26 Identities = 177/244 (73%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| || || || ||||| || || ||| | Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | |||| |||||||| || ||||| |||||||| || ||||| Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| || ||||||||||||| || || || | || || || Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAAC 2790962 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 |||| ||||| ||||| || ||| |||| | || ||||| || || ||| |||| || Sbjct 2790963 ATCCAGAAGGAGTCCACCCTACATTTAGTACTTCGCCTTCGGGGAGG-CAA--TTAACGT 2791019 Query 27646 TTTT 27649 ||| Sbjct 2791020 GTTT 2791023 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || ||||| |||||||| || || | ||||| || || Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || ||||||||||| ||||| || || || ||||||||| Sbjct 2790615 GACACCATCGAAAACGTTAAAGCCAAAATTCAGGATAAGGAAGGGATCCCGCCAGACCAG 2790674 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| || ||||| || ||| | ||||||| ||| || || ||||||| || Sbjct 2790675 CAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACAAC 2790734 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || | |||||| | || | || ||||| || || Sbjct 2790735 ATTCAGAAAGAGTCAATGCTTCATTTGGTTCTTCGACTTCGTGGAGG 2790781 >seq20 Length=2461668 Score = 125 bits (138), Expect = 8e-24 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | Sbjct 1188935 ATCATGCAGATCTTCGTGAAGACCCTAACAGGCAAGACCATCACCCTCGAGGTGGAGGCG 1188994 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||| | || | || ||||| || |||||||||||||| |||||||| || Sbjct 1188995 TCCGATACCATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGAT 1189054 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || ||||| ||||| | || |||| | || || | |||||| Sbjct 1189055 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCAGGACGCTTTCTGACTAT 1189114 Query 27583 AATGTCCA-AAAGG 27595 || |||| ||||| Sbjct 1189115 AACATCCAGAAAGG 1189128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570303727368320